Resource

Id DNase-seq/ENCSR180KMRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR180KMR [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
Description
Labels
  • accession: ENCSR180KMR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • date_created: 2020-04-18T22:21:49.900315+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR180KMR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR180KMR float

DNase-seq_ENCSR180KMR
DNase-seq ENCSR180KMR [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR180KMR [0.209, 83]
n
9,495,285
mean
7.54
sd
9.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 94952850.30% 52597
chr1 959184 0.39% 5288
chr2 665437 0.27% 3728
chr3 523415 0.26% 2884
chr4 334588 0.18% 1847
chr5 423648 0.23% 2375
chr6 558645 0.33% 3064
chr7 431895 0.27% 2398
chr8 353082 0.24% 1983
chr9 372937 0.27% 2062
chr10 426000 0.32% 2367
chr11 478947 0.35% 2639
chr12 489841 0.37% 2716
chr13 196748 0.17% 1113
chr14 335467 0.31% 1868
chr15 319273 0.31% 1790
chr16 391526 0.43% 2167
chr17 573358 0.69% 3117
chr18 151283 0.19% 841
chr19 607709 1.04% 3288
chr20 265376 0.41% 1508
chr21 113710 0.24% 636
chr22 228118 0.45% 1274
chrX 295098 0.19% 1644
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52597 4 840 180.53 180
global segment-length histogram

Files

Filename Size md5
ENCFF315IDK.bed.gz 586.51 KB af7b0d2d191689e7b93703b92bd59d52
ENCFF315IDK.tabix.bed.gz 532.09 KB 65e340b60d971a860f2c772dd50f2043
ENCFF315IDK.tabix.bed.gz.tbi 242.73 KB 21b061940fa712fe65e6c4e1a19cee15
genomic_resource.yaml 2.4 KB 7d27ff4561e2a72f672dab1a5c3b2169
statistics/