| Id: | DNase-seq/ENCSR180KMR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR180KMR [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF420MCP|/files/ENCFF420MCP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 48008432 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR180KMR | float |
DNase-seq_ENCSR180KMR |
DNase-seq ENCSR180KMR [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
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[0.209, 83] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF315IDK.bed.gz | 586.51 KB | af7b0d2d191689e7b93703b92bd59d52 |
| ENCFF315IDK.bed.gz.dvc | 100.0 B | 814ff38982751a38522afe37e07d0626 |
| ENCFF315IDK.tabix.bed.gz | 532.09 KB | 65e340b60d971a860f2c772dd50f2043 |
| ENCFF315IDK.tabix.bed.gz.dvc | 106.0 B | e8653a4183c79a29bf88a6449bda4a04 |
| ENCFF315IDK.tabix.bed.gz.tbi | 242.73 KB | 21b061940fa712fe65e6c4e1a19cee15 |
| ENCFF315IDK.tabix.bed.gz.tbi.dvc | 110.0 B | ff7902b5747c6dfd97721ba7668b24bf |
| genomic_resource.yaml | 2.4 KB | 7d27ff4561e2a72f672dab1a5c3b2169 |
| genomic_resource_original.yaml | 2.18 KB | 6b496655557a065280f9b34e40fcb4de |
| statistics/ |