DNase-seq_ENCSR178JBL
DNase-seq ENCSR178JBL [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)"]
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| Id: | DNase-seq/ENCSR178JBL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR178JBL [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: peaks audit_warning: Alignment file {ENCFF074OHR|/files/ENCFF074OHR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 38206997 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF074OHR|/files/ENCFF074OHR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR178JBL | float |
DNase-seq_ENCSR178JBL |
DNase-seq ENCSR178JBL [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)"]
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[0.158, 29.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF118OAK.bed.gz | 542.37 KB | 2ed2d3c6625cb67b3b562efb87349051 |
| ENCFF118OAK.bed.gz.dvc | 100.0 B | ef40cdae6973640968ea4998b1005fb0 |
| ENCFF118OAK.tabix.bed.gz | 486.83 KB | dc402bb0f89c8e1fb5a577976606d283 |
| ENCFF118OAK.tabix.bed.gz.dvc | 106.0 B | 5dbb8c87968d313f14f5d625ff8a7cde |
| ENCFF118OAK.tabix.bed.gz.tbi | 291.97 KB | 9a3aa2f9c5e95c624513074f810d567a |
| ENCFF118OAK.tabix.bed.gz.tbi.dvc | 110.0 B | 48ac910b7ef5ec6a01c3d7150dac7d35 |
| genomic_resource.yaml | 2.64 KB | aa5152a0ef36f036ae3ec85d6337ba9d |
| genomic_resource_original.yaml | 2.55 KB | b95ff8582a6e317ca1806a964ecfb605 |
| statistics/ |