DNase-seq_ENCSR177NIJ
DNase-seq ENCSR177NIJ [biosample_summary="Homo sapiens stomach tissue male adult (37 years)"]
×
| Id: | DNase-seq/ENCSR177NIJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR177NIJ [biosample_summary="Homo sapiens stomach tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF513MQT|/files/ENCFF513MQT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR177NIJ | float |
DNase-seq_ENCSR177NIJ |
DNase-seq ENCSR177NIJ [biosample_summary="Homo sapiens stomach tissue male adult (37 years)"]
|
|
[0.0466, 14.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF221TMD.bed.gz | 1.13 MB | 6dcb0363f13703ac0f31669a8ee948b8 |
| ENCFF221TMD.bed.gz.dvc | 101.0 B | 8a58f2e1e0031b29f9fe64a183e7f4f1 |
| ENCFF221TMD.tabix.bed.gz | 1.03 MB | d220129e7dfd794b8bb07652129337ee |
| ENCFF221TMD.tabix.bed.gz.dvc | 107.0 B | ad159e678cc5a40a5cf0827e7b008c73 |
| ENCFF221TMD.tabix.bed.gz.tbi | 320.34 KB | 3d485f5dab18e592be26f0969f85c3b2 |
| ENCFF221TMD.tabix.bed.gz.tbi.dvc | 110.0 B | e2686d66085ec9365d32583906760d6c |
| genomic_resource.yaml | 2.02 KB | a2cc298ddf82a0db77f3d754bf17a44f |
| genomic_resource_original.yaml | 1.92 KB | 64a7c98e3bfe5feed15b4a88073c778f |
| statistics/ |