Resource

Id DNase-seq/ENCSR177NIJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR177NIJ [biosample_summary="Homo sapiens stomach tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR177NIJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (37 years)
  • date_created: 2019-08-18T16:57:11.756364+00:00
  • date_released: 2020-09-19
  • doi: 10.17989/ENCSR177NIJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR177NIJ float

DNase-seq_ENCSR177NIJ
DNase-seq ENCSR177NIJ [biosample_summary="Homo sapiens stomach tissue male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR177NIJ [0.0466, 14.3]
n
20,003,701
mean
1.17
sd
1.49

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 200037010.62% 108711
chr1 1861563 0.75% 10090
chr2 1753271 0.72% 9491
chr3 1164986 0.59% 6334
chr4 607233 0.32% 3380
chr5 978183 0.54% 5329
chr6 998930 0.58% 5523
chr7 979540 0.61% 5297
chr8 823231 0.57% 4467
chr9 871924 0.63% 4724
chr10 1187859 0.89% 6452
chr11 1066706 0.79% 5752
chr12 778222 0.58% 4306
chr13 419595 0.37% 2274
chr14 646937 0.60% 3565
chr15 768353 0.75% 4209
chr16 708592 0.78% 3850
chr17 985795 1.18% 5304
chr18 439490 0.55% 2405
chr19 922695 1.57% 4884
chr20 653494 1.01% 3562
chr21 304712 0.65% 1641
chr22 608536 1.20% 3287
chrX 456264 0.29% 2479
chrY 17590 0.03% 106
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108711 2 1280 184.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF221TMD.bed.gz 1.13 MB 6dcb0363f13703ac0f31669a8ee948b8
ENCFF221TMD.tabix.bed.gz 1.03 MB d220129e7dfd794b8bb07652129337ee
ENCFF221TMD.tabix.bed.gz.tbi 320.34 KB 3d485f5dab18e592be26f0969f85c3b2
genomic_resource.yaml 2.02 KB a2cc298ddf82a0db77f3d754bf17a44f
statistics/