Resource

Id DNase-seq/ENCSR177GYCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR177GYC [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour"]
Description
Labels
  • accession: ENCSR177GYC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour
  • date_created: 2020-04-19T18:36:47.806985+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR177GYC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR177GYC float

DNase-seq_ENCSR177GYC
DNase-seq ENCSR177GYC [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR177GYC [0.42, 39.4]
n
5,583,344
mean
5.94
sd
4.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 55833440.17% 29541
chr1 580671 0.23% 3072
chr2 383133 0.16% 2035
chr3 302158 0.15% 1602
chr4 185360 0.10% 971
chr5 235697 0.13% 1250
chr6 309055 0.18% 1650
chr7 259237 0.16% 1381
chr8 194633 0.13% 1038
chr9 223966 0.16% 1175
chr10 232423 0.17% 1252
chr11 291004 0.22% 1535
chr12 285427 0.21% 1507
chr13 110728 0.10% 579
chr14 193297 0.18% 1020
chr15 179731 0.18% 965
chr16 242681 0.27% 1280
chr17 360584 0.43% 1907
chr18 79749 0.10% 425
chr19 421056 0.72% 2156
chr20 155911 0.24% 846
chr21 59377 0.13% 327
chr22 142991 0.28% 761
chrX 154475 0.10% 807
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29541 9 700 189 180
global segment-length histogram

Files

Filename Size md5
ENCFF362RQW.bed.gz 323.86 KB ca49a54059db2933c42b02c026e4d9cf
ENCFF362RQW.tabix.bed.gz 292.39 KB 7494619755594f5cf96ade2c632b8061
ENCFF362RQW.tabix.bed.gz.tbi 169.36 KB 09d8ff5e2697bef8e87d0c62790cd981
genomic_resource.yaml 2.45 KB adc136edb6f38a03e13ec64efd5a224b
statistics/