| Id: | DNase-seq/ENCSR177GYC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR177GYC [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF522RVG|/files/ENCFF522RVG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28654752 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR177GYC | float |
DNase-seq_ENCSR177GYC |
DNase-seq ENCSR177GYC [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour"]
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[0.42, 39.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF362RQW.bed.gz | 323.86 KB | ca49a54059db2933c42b02c026e4d9cf |
| ENCFF362RQW.bed.gz.dvc | 100.0 B | 9e88835183ee1ea08bbb36a154f2b15f |
| ENCFF362RQW.tabix.bed.gz | 292.39 KB | 7494619755594f5cf96ade2c632b8061 |
| ENCFF362RQW.tabix.bed.gz.dvc | 106.0 B | 265d7de3b7c3c1d080a4e27e617d8de7 |
| ENCFF362RQW.tabix.bed.gz.tbi | 169.36 KB | 09d8ff5e2697bef8e87d0c62790cd981 |
| ENCFF362RQW.tabix.bed.gz.tbi.dvc | 110.0 B | 8457463553f912965a3fd61538ae3a6d |
| genomic_resource.yaml | 2.45 KB | adc136edb6f38a03e13ec64efd5a224b |
| genomic_resource_original.yaml | 2.22 KB | 71f23cbfa1730376f4e5e6d694eb8d54 |
| statistics/ |