DNase-seq_ENCSR176KYD
DNase-seq ENCSR176KYD [biosample_summary="Homo sapiens fibroblast of skin of abdomen male embryo (97 days)"]
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| Id: | DNase-seq/ENCSR176KYD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR176KYD [biosample_summary="Homo sapiens fibroblast of skin of abdomen male embryo (97 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN357LPQ|/analyses/ENCAN357LPQ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF396BNI|/files/ENCFF396BNI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 40282737 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF658JQA|/files/ENCFF658JQA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 40006712 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR176KYD | float |
DNase-seq_ENCSR176KYD |
DNase-seq ENCSR176KYD [biosample_summary="Homo sapiens fibroblast of skin of abdomen male embryo (97 days)"]
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[2, 1.65e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF937WLI.bed.gz | 1.1 MB | ac69c709e9be046f622c94b7de6d27e5 |
| ENCFF937WLI.bed.gz.dvc | 101.0 B | ddad271b8e3632bb2817f596af10f94e |
| ENCFF937WLI.tabix.bed.gz | 975.59 KB | 48c7c25c0d532fd1fec0620dcb8a2b10 |
| ENCFF937WLI.tabix.bed.gz.dvc | 106.0 B | 3da4f68162fd2cfa2fada0ed810048ee |
| ENCFF937WLI.tabix.bed.gz.tbi | 524.55 KB | 0055065c363115fb56a6cdaa2cee8038 |
| ENCFF937WLI.tabix.bed.gz.tbi.dvc | 110.0 B | 4f86d667c476bef36b16258e06e6ebf9 |
| genomic_resource.yaml | 2.63 KB | 6811fb4074791c42769833d9670a9199 |
| genomic_resource_original.yaml | 2.52 KB | d4073cb0a7ca4cacbb1b17210e7e5e0d |
| statistics/ |