Resource

Id DNase-seq/ENCSR176BPJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR176BPJ [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR176BPJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-15T22:21:53.795720+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR176BPJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR176BPJ float

DNase-seq_ENCSR176BPJ
DNase-seq ENCSR176BPJ [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR176BPJ [0.0602, 25]
n
16,875,646
mean
2.16
sd
2.78

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 168756460.52% 87166
chr1 1497015 0.60% 7634
chr2 1365470 0.56% 6998
chr3 901172 0.45% 4652
chr4 649637 0.34% 3243
chr5 797391 0.44% 4165
chr6 772658 0.45% 3988
chr7 838931 0.53% 4384
chr8 761130 0.52% 3925
chr9 742931 0.54% 3860
chr10 986652 0.74% 5089
chr11 931244 0.69% 4827
chr12 707985 0.53% 3666
chr13 317245 0.28% 1656
chr14 541533 0.51% 2814
chr15 570327 0.56% 2945
chr16 643968 0.71% 3405
chr17 918696 1.10% 4845
chr18 369321 0.46% 1891
chr19 827401 1.41% 4185
chr20 544042 0.84% 2883
chr21 241419 0.52% 1251
chr22 555576 1.09% 2847
chrX 393408 0.25% 2009
chrY 494 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87166 1 960 193.6 180
global segment-length histogram

Files

Filename Size md5
ENCFF456GXS.bed.gz 938.12 KB 353614ad3bf1f3954b586790b940a1ce
ENCFF456GXS.tabix.bed.gz 862.03 KB 3fb2631d77f97e0354248bae16a6fa65
ENCFF456GXS.tabix.bed.gz.tbi 287.3 KB 395617c592b15f89f381b0e9f4708dbd
genomic_resource.yaml 1.47 KB c47e4300043b3f73a1a7bcd766c9691c
statistics/