| Id: | DNase-seq/ENCSR175OHT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR175OHT [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours output_type: peaks audit_error: Alignment file {ENCFF782CFI|/files/ENCFF782CFI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 16071086 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN694QOH|/analyses/ENCAN694QOH/} has in progress subobject document {edc616f9-f928-46f0-bcae-20cf7654fcc6|/documents/edc616f9-f928-46f0-bcae-20cf7654fcc6/} audit_internal_action: Released analysis {ENCAN694QOH|/analyses/ENCAN694QOH/} has in progress subobject document {3a20fd08-9f0c-4883-84f6-c8f1a5eb3edb|/documents/3a20fd08-9f0c-4883-84f6-c8f1a5eb3edb/} |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR175OHT | float |
DNase-seq_ENCSR175OHT |
DNase-seq ENCSR175OHT [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
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[0.562, 37.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF199PMO.bed.gz | 298.56 KB | cb669352325b00b6ba08f8bf3af2ed07 |
| ENCFF199PMO.bed.gz.dvc | 100.0 B | ced6f8ad5c594c9944886b84a5cdc4d7 |
| ENCFF199PMO.tabix.bed.gz | 265.31 KB | f1f05b9f8f67632e0acd6b95f38cc730 |
| ENCFF199PMO.tabix.bed.gz.dvc | 106.0 B | ffc128d43b1997e5d670ba600120ea33 |
| ENCFF199PMO.tabix.bed.gz.tbi | 169.5 KB | d15fb0be2632067d60393ffb6fdd1e00 |
| ENCFF199PMO.tabix.bed.gz.tbi.dvc | 110.0 B | 15fbfc38f68df85ae1d8a573b2eecbbc |
| genomic_resource.yaml | 2.84 KB | 53a30b0c766471ca0b8c6d9c6ebb1610 |
| genomic_resource_original.yaml | 2.62 KB | b573031adfcdd8681092c3984fb991d9 |
| statistics/ |