Resource
| Id | DNase-seq/ENCSR175OHT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR175OHT [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours output_type: peaks audit_error: Alignment file {ENCFF782CFI|/files/ENCFF782CFI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 16071086 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN694QOH|/analyses/ENCAN694QOH/} has in progress subobject document {edc616f9-f928-46f0-bcae-20cf7654fcc6|/documents/edc616f9-f928-46f0-bcae-20cf7654fcc6/} audit_internal_action: Released analysis {ENCAN694QOH|/analyses/ENCAN694QOH/} has in progress subobject document {3a20fd08-9f0c-4883-84f6-c8f1a5eb3edb|/documents/3a20fd08-9f0c-4883-84f6-c8f1a5eb3edb/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR175OHT | float |
DNase-seq_ENCSR175OHT |
DNase-seq ENCSR175OHT [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
|
 |
[0.562, 37.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4914098 | 0.15% | 27624 |
| chr1 | 505311 | 0.20% | 2859 |
| chr2 | 337652 | 0.14% | 1912 |
| chr3 | 272715 | 0.14% | 1531 |
| chr4 | 171331 | 0.09% | 974 |
| chr5 | 218019 | 0.12% | 1238 |
| chr6 | 282347 | 0.17% | 1618 |
| chr7 | 222077 | 0.14% | 1253 |
| chr8 | 173368 | 0.12% | 980 |
| chr9 | 200507 | 0.14% | 1143 |
| chr10 | 205858 | 0.15% | 1179 |
| chr11 | 262197 | 0.19% | 1453 |
| chr12 | 257739 | 0.19% | 1440 |
| chr13 | 97516 | 0.09% | 531 |
| chr14 | 169670 | 0.16% | 947 |
| chr15 | 160594 | 0.16% | 928 |
| chr16 | 210005 | 0.23% | 1164 |
| chr17 | 286838 | 0.34% | 1611 |
| chr18 | 73295 | 0.09% | 417 |
| chr19 | 365821 | 0.62% | 1956 |
| chr20 | 138402 | 0.21% | 797 |
| chr21 | 55552 | 0.12% | 317 |
| chr22 | 119653 | 0.24% | 669 |
| chrX | 123140 | 0.08% | 684 |
| chrY | 4491 | 0.01% | 23 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 27624 | 4 | 700 | 177.89 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF199PMO.bed.gz | 298.56 KB | cb669352325b00b6ba08f8bf3af2ed07 |
| ENCFF199PMO.tabix.bed.gz | 265.31 KB | f1f05b9f8f67632e0acd6b95f38cc730 |
| ENCFF199PMO.tabix.bed.gz.tbi | 169.5 KB | d15fb0be2632067d60393ffb6fdd1e00 |
| genomic_resource.yaml | 2.84 KB | 53a30b0c766471ca0b8c6d9c6ebb1610 |
| statistics/ |