DNase-seq_ENCSR175IWT
DNase-seq ENCSR175IWT [biosample_summary="Homo sapiens kidney tubule cell female adult (80 years) and male adult (62 years)"]
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| Id: | DNase-seq/ENCSR175IWT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR175IWT [biosample_summary="Homo sapiens kidney tubule cell female adult (80 years) and male adult (62 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (80 years) male adult (62 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF977YJN|/files/ENCFF977YJN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR175IWT | float |
DNase-seq_ENCSR175IWT |
DNase-seq ENCSR175IWT [biosample_summary="Homo sapiens kidney tubule cell female adult (80 years) and male adult (62 years)"]
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[0.0129, 15.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF416ORJ.bed.gz | 2.98 MB | 226a6b0b85934ade251ff7e988c4a1dd |
| ENCFF416ORJ.bed.gz.dvc | 101.0 B | 76c973ed25efd0d2c1256ee48e91ef88 |
| ENCFF416ORJ.tabix.bed.gz | 2.73 MB | 765985cab9580b82cec1e6c68d2eb119 |
| ENCFF416ORJ.tabix.bed.gz.dvc | 107.0 B | 2f1e29840cda28742d9b337b0702ac15 |
| ENCFF416ORJ.tabix.bed.gz.tbi | 734.22 KB | ba88b62546124ae9a82ba3dfd4b6c40e |
| ENCFF416ORJ.tabix.bed.gz.tbi.dvc | 110.0 B | 6b2946282314b04a95b7f15e9b6316e8 |
| genomic_resource.yaml | 2.17 KB | 8883e8980926efbd2d3118c0670e89c3 |
| genomic_resource_original.yaml | 2.04 KB | 9f3cae4e8910bf89be37263047778556 |
| statistics/ |