Resource

Id DNase-seq/ENCSR174JMMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR174JMM [biosample_summary="Homo sapiens heart tissue female embryo (117 days)"]
Description
Labels
  • accession: ENCSR174JMM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000948/
  • biosample_summary: Homo sapiens heart tissue female embryo (117 days)
  • date_created: 2015-09-16T21:42:26.435963+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR174JMM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (117 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR174JMM float

DNase-seq_ENCSR174JMM
DNase-seq ENCSR174JMM [biosample_summary="Homo sapiens heart tissue female embryo (117 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR174JMM [2, 1.25e+03]
n
9,897,393
mean
49.8
sd
43.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 98973930.31% 65758
chr1 947246 0.38% 6303
chr2 798788 0.33% 5303
chr3 672118 0.34% 4461
chr4 516116 0.27% 3426
chr5 559659 0.31% 3720
chr6 592092 0.35% 3936
chr7 529526 0.33% 3516
chr8 448399 0.31% 2980
chr9 408419 0.30% 2720
chr10 479904 0.36% 3184
chr11 495357 0.37% 3294
chr12 484260 0.36% 3214
chr13 276754 0.24% 1839
chr14 297228 0.28% 1976
chr15 337553 0.33% 2240
chr16 294710 0.33% 1961
chr17 412521 0.50% 2746
chr18 224950 0.28% 1491
chr19 350826 0.60% 2332
chr20 243327 0.38% 1612
chr21 109009 0.23% 726
chr22 175106 0.34% 1165
chrX 242625 0.16% 1607
chrY 900 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65758 17 600 150.51 150
global segment-length histogram

Files

Filename Size md5
ENCFF590FZJ.bed.gz 639.46 KB 62fbaee2e4d8587961de27543273b74e
ENCFF590FZJ.tabix.bed.gz 548.57 KB 39aa061ca31c30d899f88934591926f1
ENCFF590FZJ.tabix.bed.gz.tbi 325.77 KB 0e6d7be9aeeadfe6d7442eede58f9100
genomic_resource.yaml 1.39 KB 8b5930eccaabfc11164c4137e1678cef
statistics/