DNase-seq_ENCSR173YSO
DNase-seq ENCSR173YSO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (79 years)"]
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| Id: | DNase-seq/ENCSR173YSO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR173YSO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (79 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (79 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF505OFL|/files/ENCFF505OFL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR173YSO | float |
DNase-seq_ENCSR173YSO |
DNase-seq ENCSR173YSO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (79 years)"]
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[0.0663, 11] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF295XKP.bed.gz | 650.54 KB | 2a86c4aaaadfacc2a9cf5b74794d45eb |
| ENCFF295XKP.bed.gz.dvc | 100.0 B | 78f518440132830cc7c3c4ce04b870ae |
| ENCFF295XKP.tabix.bed.gz | 596.02 KB | e912fc238f3d0855fd4418bb58314d4b |
| ENCFF295XKP.tabix.bed.gz.dvc | 106.0 B | e0347f824b6023bd3ad271d5989905ad |
| ENCFF295XKP.tabix.bed.gz.tbi | 237.66 KB | 9c5db344415afa15f79e9131510f1c73 |
| ENCFF295XKP.tabix.bed.gz.tbi.dvc | 110.0 B | d26a4346f4ac850bbcffd1e52cb53e61 |
| genomic_resource.yaml | 2.1 KB | d07b2fffcd9a95ea43475688a3d54474 |
| genomic_resource_original.yaml | 1.98 KB | 8e6b9d84cbacab765eb2396ba8dd40b3 |
| statistics/ |