DNase-seq_ENCSR173NHL
DNase-seq ENCSR173NHL [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR173NHL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR173NHL [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF727VRD|/files/ENCFF727VRD/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR173NHL | float |
DNase-seq_ENCSR173NHL |
DNase-seq ENCSR173NHL [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0418, 25.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF084OJU.bed.gz | 1021.23 KB | 958e591a0e634264e0b2a8967e80f43d |
| ENCFF084OJU.bed.gz.dvc | 101.0 B | bec1abcea35981fa4c17999af11b3790 |
| ENCFF084OJU.tabix.bed.gz | 933.58 KB | 5e861e784b998dfd135dde34f7ebdfae |
| ENCFF084OJU.tabix.bed.gz.dvc | 106.0 B | c391139d463578ad47006a069f5c3c8b |
| ENCFF084OJU.tabix.bed.gz.tbi | 341.4 KB | 136b8bec81890398f4e452640e6de05d |
| ENCFF084OJU.tabix.bed.gz.tbi.dvc | 110.0 B | 1e0547d2df43dd559879ae13e21c8171 |
| genomic_resource.yaml | 2.12 KB | 5919e3be4e22a78c751db40e0a10f158 |
| genomic_resource_original.yaml | 2.0 KB | eae5de48b70da1c34688db3f0bea080d |
| statistics/ |