| Id: | DNase-seq/ENCSR173HPQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR173HPQ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF940SGS|/files/ENCFF940SGS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28113004 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR173HPQ | float |
DNase-seq_ENCSR173HPQ |
DNase-seq ENCSR173HPQ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
|
 |
[0.285, 101] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF830OVF.bed.gz | 456.38 KB | b06e79330c3497ee3212c84265114881 |
| ENCFF830OVF.bed.gz.dvc | 100.0 B | 36e7b68ef48a82ba42393da5178e40d6 |
| ENCFF830OVF.tabix.bed.gz | 411.55 KB | 3c3f058e0b25f89840b92602692f7506 |
| ENCFF830OVF.tabix.bed.gz.dvc | 106.0 B | beab2252ea6bc73c5407c051f0f4d388 |
| ENCFF830OVF.tabix.bed.gz.tbi | 209.82 KB | d9b6ca48860e4f0173c9f24bfadf4668 |
| ENCFF830OVF.tabix.bed.gz.tbi.dvc | 110.0 B | f1e1e8df986b2b5eaf349da992d47fb3 |
| genomic_resource.yaml | 2.21 KB | 2d234cba621126bb764248006b5cc4d9 |
| genomic_resource_original.yaml | 2.04 KB | a79d02b0fe618d9d67eac2818a46f09f |
| statistics/ |