Resource

Id DNase-seq/ENCSR173BJCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR173BJC [biosample_summary="Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR173BJC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000660/
  • biosample_summary: Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:08.720908+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR173BJC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment: The biosample ontology on this experiment was previously CL:0000905 (effector memory CD4-positive, alpha-beta T cell). It has been updated to NTR:0000660 (activated effector memory CD4-positive, alpha-beta T cell) on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR173BJC float

DNase-seq_ENCSR173BJC
DNase-seq ENCSR173BJC [biosample_summary="Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR173BJC [0.137, 52.9]
n
9,177,509
mean
5.95
sd
7.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 91775090.29% 44124
chr1 939644 0.38% 4521
chr2 621625 0.26% 3012
chr3 490526 0.25% 2335
chr4 296714 0.16% 1387
chr5 406827 0.22% 1962
chr6 520248 0.30% 2486
chr7 411347 0.26% 2003
chr8 333608 0.23% 1616
chr9 371909 0.27% 1782
chr10 407062 0.30% 1956
chr11 469870 0.35% 2275
chr12 470986 0.35% 2236
chr13 178522 0.16% 836
chr14 320895 0.30% 1535
chr15 290752 0.29% 1437
chr16 394692 0.44% 1899
chr17 593754 0.71% 2851
chr18 138361 0.17% 679
chr19 630656 1.08% 3002
chr20 261003 0.41% 1280
chr21 107821 0.23% 512
chr22 237549 0.47% 1158
chrX 271327 0.17% 1308
chrY 11811 0.02% 56
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44124 1 960 207.99 200
global segment-length histogram

Files

Filename Size md5
ENCFF680JPD.bed.gz 493.67 KB 8f481ddf7fe397bb9f4e96175caa8a11
ENCFF680JPD.tabix.bed.gz 451.66 KB 97fdcb24409d4cd7734af5db083d6398
ENCFF680JPD.tabix.bed.gz.tbi 212.24 KB cb30e1123dd0aa5fb25ad545c1ef970a
genomic_resource.yaml 1.81 KB f672933fa95d9040a010daabac0f58f5
statistics/