Resource

Id DNase-seq/ENCSR172PVJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR172PVJ [biosample_summary="Homo sapiens stomach tissue male embryo (91 days)"]
Description
Labels
  • accession: ENCSR172PVJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male embryo (91 days)
  • date_created: 2015-09-16T21:42:23.516206+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR172PVJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (91 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR172PVJ float

DNase-seq_ENCSR172PVJ
DNase-seq ENCSR172PVJ [biosample_summary="Homo sapiens stomach tissue male embryo (91 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR172PVJ [4, 1.13e+03]
n
6,913,034
mean
33.7
sd
27.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 69130340.21% 45937
chr1 660879 0.27% 4388
chr2 556905 0.23% 3701
chr3 463257 0.23% 3074
chr4 356895 0.19% 2368
chr5 383270 0.21% 2546
chr6 425028 0.25% 2823
chr7 350700 0.22% 2331
chr8 311649 0.21% 2071
chr9 279000 0.20% 1854
chr10 313582 0.23% 2086
chr11 350522 0.26% 2332
chr12 353247 0.27% 2347
chr13 189750 0.17% 1261
chr14 215426 0.20% 1433
chr15 222546 0.22% 1475
chr16 217316 0.24% 1446
chr17 290400 0.35% 1930
chr18 148950 0.19% 990
chr19 274794 0.47% 1828
chr20 177450 0.28% 1180
chr21 83877 0.18% 558
chr22 116141 0.23% 772
chrX 163500 0.10% 1090
chrY 7950 0.01% 53
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45937 26 300 150.49 150
global segment-length histogram

Files

Filename Size md5
ENCFF640UDN.bed.gz 448.72 KB f88b7e87d6b269c93aecbd18d2e4d042
ENCFF640UDN.tabix.bed.gz 382.45 KB f0d10dc1c0e595681951fd657cff56ba
ENCFF640UDN.tabix.bed.gz.tbi 283.69 KB e82628f5df930d80c09f955cd48aff33
genomic_resource.yaml 1.38 KB 0d02044c1ec3750aef35e1ea18e81ba3
statistics/