DNase-seq_ENCSR171ETY
DNase-seq ENCSR171ETY [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)"]
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| Id: | DNase-seq/ENCSR171ETY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR171ETY [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF109XKX|/files/ENCFF109XKX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR171ETY | float |
DNase-seq_ENCSR171ETY |
DNase-seq ENCSR171ETY [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)"]
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[0.0283, 13.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF978FIB.bed.gz | 1.24 MB | 49400331d4ea66aad67ad21cc0c73b2f |
| ENCFF978FIB.bed.gz.dvc | 101.0 B | c2d9fe84f519f6ea0d0cb701e4877452 |
| ENCFF978FIB.tabix.bed.gz | 1.18 MB | d5ed5c4cb109ad4f0ad1c5e1764e9e6a |
| ENCFF978FIB.tabix.bed.gz.dvc | 107.0 B | 3fecc5760605da225e6651133e1d2f9d |
| ENCFF978FIB.tabix.bed.gz.tbi | 236.89 KB | 48b144c44720a1beb6d8f59fbacac312 |
| ENCFF978FIB.tabix.bed.gz.tbi.dvc | 110.0 B | 63846671dfa5dfdfd72fdeaf2618c69e |
| genomic_resource.yaml | 2.06 KB | 31eb3e1a473ab4947063b468462c444a |
| genomic_resource_original.yaml | 1.95 KB | 5c11607c63ab946c9c20a030479d6c1d |
| statistics/ |