| Id: | DNase-seq/ENCSR171APM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR171APM [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF387NWM|/files/ENCFF387NWM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22036456 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR171APM | float |
DNase-seq_ENCSR171APM |
DNase-seq ENCSR171APM [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
|
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[0.501, 45.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF960KOG.bed.gz | 356.14 KB | a653d16cfccc947136297abf87ef7957 |
| ENCFF960KOG.bed.gz.dvc | 100.0 B | cafa4541afe225e42eb2f374b362a891 |
| ENCFF960KOG.tabix.bed.gz | 320.86 KB | 7d356eb2adc658a91301a41cfc2a8f6c |
| ENCFF960KOG.tabix.bed.gz.dvc | 106.0 B | 152520e2cf39944ef32e22d2fa7912c1 |
| ENCFF960KOG.tabix.bed.gz.tbi | 182.0 KB | 79b726443b831945ae2e8c65689b5cf3 |
| ENCFF960KOG.tabix.bed.gz.tbi.dvc | 110.0 B | 177b37582e9c4ca3989ca6f2179496b0 |
| genomic_resource.yaml | 2.25 KB | e45757f3b9fa11a65f58d17d003a2150 |
| genomic_resource_original.yaml | 2.07 KB | 3e33bfa1a5cc361b593f1f772a89156f |
| statistics/ |