DNase-seq_ENCSR171ADO
DNase-seq ENCSR171ADO [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR171ADO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR171ADO [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Released analysis {ENCAN462INF|/analyses/ENCAN462INF/} has in progress subobject document {e6febaa3-f34f-427a-b386-8547a0adb3ed|/documents/e6febaa3-f34f-427a-b386-8547a0adb3ed/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF513STI|/files/ENCFF513STI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR171ADO | float |
DNase-seq_ENCSR171ADO |
DNase-seq ENCSR171ADO [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)"]
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[0.106, 18.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF599SNK.bed.gz | 669.47 KB | a655fbbd6b3dd9d713275998e71f3f58 |
| ENCFF599SNK.bed.gz.dvc | 100.0 B | 12adc12f248a094fba95b84e4dea49f8 |
| ENCFF599SNK.tabix.bed.gz | 605.76 KB | 5168bce4b56b7cab7fd1c08fe8b57aca |
| ENCFF599SNK.tabix.bed.gz.dvc | 106.0 B | 0951f9c7a888364206a412b08979ddd3 |
| ENCFF599SNK.tabix.bed.gz.tbi | 288.39 KB | ca58c333e159cda4711704d62ed92b24 |
| ENCFF599SNK.tabix.bed.gz.tbi.dvc | 110.0 B | 5f16f1835893e0af8c4ceeccda9b8af6 |
| genomic_resource.yaml | 2.27 KB | fae125491dab2b4b1da969c31e3e7444 |
| genomic_resource_original.yaml | 2.17 KB | 3476c8bb4f64c12a434c436b9a6f63b2 |
| statistics/ |