Resource

Id DNase-seq/ENCSR169KNOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR169KNO [biosample_summary="Homo sapiens progenitor cell of endocrine pancreas"]
Description
Labels
  • accession: ENCSR169KNO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0002351/
  • biosample_summary: Homo sapiens progenitor cell of endocrine pancreas
  • date_created: 2020-04-12T05:59:34.337500+00:00
  • date_released: 2021-02-27
  • doi: 10.17989/ENCSR169KNO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR169KNO float

DNase-seq_ENCSR169KNO

DNase-seq ENCSR169KNO [biosample_summary="Homo sapiens progenitor cell of endocrine pancreas"]
HISTOGRAM FOR DNase-seq_ENCSR169KNO [0.0606, 16.3]
n
10,758,703
mean
1.92
sd
1.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 107587030.33% 51043
chr1 1056478 0.42% 4960
chr2 772461 0.32% 3741
chr3 588700 0.30% 2759
chr4 433229 0.23% 1996
chr5 514868 0.28% 2453
chr6 565478 0.33% 2626
chr7 504704 0.32% 2388
chr8 459330 0.32% 2183
chr9 458935 0.33% 2172
chr10 534100 0.40% 2598
chr11 591042 0.44% 2851
chr12 572401 0.43% 2656
chr13 220360 0.19% 1017
chr14 357446 0.33% 1668
chr15 372190 0.36% 1782
chr16 397250 0.44% 1920
chr17 572687 0.69% 2721
chr18 193256 0.24% 895
chr19 603409 1.03% 2794
chr20 310180 0.48% 1526
chr21 135972 0.29% 667
chr22 250576 0.49% 1266
chrX 293330 0.19% 1401
chrY 321 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51043 1 1020 210.78 200
global segment-length histogram

Files

Filename Size md5
ENCFF971MIV.bed.gz 554.96 KB 8c665bebd407dd17d443e717d364fd03
ENCFF971MIV.tabix.bed.gz 512.38 KB 513628f4a58631fa332f434e10468bb3
ENCFF971MIV.tabix.bed.gz.tbi 237.9 KB d165fcde73bf94cfea484ef1b78ea7e6
genomic_resource.yaml 2.03 KB 172f1d302ade3e86786ebbfcb1aadd6c
statistics/