DNase-seq_ENCSR169KNO
DNase-seq ENCSR169KNO [biosample_summary="Homo sapiens progenitor cell of endocrine pancreas"]
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| Id: | DNase-seq/ENCSR169KNO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR169KNO [biosample_summary="Homo sapiens progenitor cell of endocrine pancreas"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF008WMZ|/files/ENCFF008WMZ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR169KNO | float |
DNase-seq_ENCSR169KNO |
DNase-seq ENCSR169KNO [biosample_summary="Homo sapiens progenitor cell of endocrine pancreas"]
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[0.0606, 16.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF971MIV.bed.gz | 554.96 KB | 8c665bebd407dd17d443e717d364fd03 |
| ENCFF971MIV.bed.gz.dvc | 100.0 B | ef94352eea916e40b1ce5ad8e3d8f149 |
| ENCFF971MIV.tabix.bed.gz | 512.38 KB | 513628f4a58631fa332f434e10468bb3 |
| ENCFF971MIV.tabix.bed.gz.dvc | 106.0 B | 88539db6522e98f16bf161a6f58ef0b0 |
| ENCFF971MIV.tabix.bed.gz.tbi | 237.9 KB | d165fcde73bf94cfea484ef1b78ea7e6 |
| ENCFF971MIV.tabix.bed.gz.tbi.dvc | 110.0 B | 30fef989ff8b7e19154510e9bf632515 |
| genomic_resource.yaml | 2.03 KB | 172f1d302ade3e86786ebbfcb1aadd6c |
| genomic_resource_original.yaml | 1.94 KB | dec1f0a74ea2d966b698a9169e124944 |
| statistics/ |