Resource

Id DNase-seq/ENCSR167XSQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR167XSQ [biosample_summary="Homo sapiens muscle of leg tissue male embryo (101 days)"]
Description
Labels
  • accession: ENCSR167XSQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001383/
  • biosample_summary: Homo sapiens muscle of leg tissue male embryo (101 days)
  • date_created: 2015-09-16T21:42:36.699292+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR167XSQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (101 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR167XSQ float

DNase-seq_ENCSR167XSQ
DNase-seq ENCSR167XSQ [biosample_summary="Homo sapiens muscle of leg tissue male embryo (101 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR167XSQ [0.188, 22.5]
n
13,927,551
mean
2.85
sd
2.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 139275510.43% 76036
chr1 1254451 0.50% 6859
chr2 1119513 0.46% 6118
chr3 906656 0.46% 4998
chr4 724852 0.38% 3979
chr5 773164 0.43% 4282
chr6 855018 0.50% 4626
chr7 695621 0.44% 3874
chr8 667705 0.46% 3624
chr9 585348 0.42% 3177
chr10 669548 0.50% 3701
chr11 718588 0.53% 3851
chr12 689869 0.52% 3789
chr13 390616 0.34% 2172
chr14 471578 0.44% 2535
chr15 447296 0.44% 2450
chr16 422295 0.47% 2306
chr17 559358 0.67% 2999
chr18 308338 0.38% 1714
chr19 526245 0.90% 2680
chr20 350241 0.54% 1926
chr21 165080 0.35% 914
chr22 231464 0.46% 1269
chrX 382196 0.24% 2122
chrY 12511 0.02% 71
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76036 4 760 183.17 180
global segment-length histogram

Files

Filename Size md5
ENCFF718OIX.bed.gz 807.79 KB 34fb6f7cd31fdc035cc65b194fbb89b4
ENCFF718OIX.tabix.bed.gz 724.35 KB 7ac145932aaacf0b07a545a8296d9233
ENCFF718OIX.tabix.bed.gz.tbi 389.22 KB b8bfd59be650ab51689b5fbdddb78624
genomic_resource.yaml 1.84 KB 4b466eb4e0ce1c0b4ef795774c319ff2
statistics/