Resource
| Id | DNase-seq/ENCSR167VIP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR167VIP [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour output_type: peaks audit_error: Alignment file {ENCFF868LUM|/files/ENCFF868LUM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 11112690 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR167VIP | float |
DNase-seq_ENCSR167VIP |
DNase-seq ENCSR167VIP [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
|
 |
[0.721, 80.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4684769 | 0.15% | 26265 |
| chr1 | 481802 | 0.19% | 2717 |
| chr2 | 320226 | 0.13% | 1824 |
| chr3 | 253343 | 0.13% | 1412 |
| chr4 | 156612 | 0.08% | 874 |
| chr5 | 199082 | 0.11% | 1127 |
| chr6 | 259651 | 0.15% | 1470 |
| chr7 | 219810 | 0.14% | 1234 |
| chr8 | 161651 | 0.11% | 924 |
| chr9 | 185487 | 0.13% | 1043 |
| chr10 | 189593 | 0.14% | 1087 |
| chr11 | 251321 | 0.19% | 1384 |
| chr12 | 243320 | 0.18% | 1351 |
| chr13 | 96225 | 0.08% | 533 |
| chr14 | 163158 | 0.15% | 919 |
| chr15 | 147871 | 0.14% | 837 |
| chr16 | 200719 | 0.22% | 1133 |
| chr17 | 291351 | 0.35% | 1672 |
| chr18 | 69594 | 0.09% | 384 |
| chr19 | 358637 | 0.61% | 1911 |
| chr20 | 128967 | 0.20% | 737 |
| chr21 | 54795 | 0.12% | 303 |
| chr22 | 114098 | 0.22% | 640 |
| chrX | 137456 | 0.09% | 749 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 26265 | 18 | 700 | 178.37 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF005BUD.bed.gz | 286.87 KB | 527e1b96381e60933b402a1457a97962 |
| ENCFF005BUD.tabix.bed.gz | 256.3 KB | 27f99d28183bb9e9cf0063b6e3ae1972 |
| ENCFF005BUD.tabix.bed.gz.tbi | 157.86 KB | ec21c8911efcd186342c4eae01b73ef9 |
| genomic_resource.yaml | 2.24 KB | a070c8f1701d32945e6242ff8ef6d648 |
| statistics/ |