| Id: | DNase-seq/ENCSR167VIP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR167VIP [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour output_type: peaks audit_error: Alignment file {ENCFF868LUM|/files/ENCFF868LUM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 11112690 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR167VIP | float |
DNase-seq_ENCSR167VIP |
DNase-seq ENCSR167VIP [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
|
 |
[0.721, 80.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF005BUD.bed.gz | 286.87 KB | 527e1b96381e60933b402a1457a97962 |
| ENCFF005BUD.bed.gz.dvc | 100.0 B | 0bd7b956501d95e8dba76f9dc0012e3f |
| ENCFF005BUD.tabix.bed.gz | 256.3 KB | 27f99d28183bb9e9cf0063b6e3ae1972 |
| ENCFF005BUD.tabix.bed.gz.dvc | 106.0 B | 6f268805e6e510f043049b8cb58cc834 |
| ENCFF005BUD.tabix.bed.gz.tbi | 157.86 KB | ec21c8911efcd186342c4eae01b73ef9 |
| ENCFF005BUD.tabix.bed.gz.tbi.dvc | 110.0 B | b57e3591c084152f8c77fa4a01dac2e4 |
| genomic_resource.yaml | 2.24 KB | a070c8f1701d32945e6242ff8ef6d648 |
| genomic_resource_original.yaml | 2.06 KB | 1018d36434796ccd4dd41c0e99ded094 |
| statistics/ |