Resource

Id DNase-seq/ENCSR167JFXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR167JFX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (37 years)"]
Description
Labels
  • accession: ENCSR167JFX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (37 years)
  • date_created: 2015-09-16T21:42:03.316066+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR167JFX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR167JFX float

DNase-seq_ENCSR167JFX
DNase-seq ENCSR167JFX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR167JFX [6, 4.26e+04]
n
31,213,893
mean
1.02e+03
sd
3.08e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312138930.97% 207750
chr1 2937985 1.18% 19564
chr2 2377465 0.98% 15823
chr3 1842128 0.93% 12250
chr4 1384063 0.73% 9209
chr5 1556264 0.86% 10359
chr6 1817330 1.06% 12099
chr7 1512035 0.95% 10061
chr8 1277557 0.88% 8504
chr9 1311421 0.95% 8730
chr10 1370865 1.02% 9121
chr11 1666247 1.23% 11090
chr12 1513125 1.14% 10081
chr13 736426 0.64% 4896
chr14 1074717 1.00% 7153
chr15 967318 0.95% 6435
chr16 1111137 1.23% 7398
chr17 1616660 1.94% 10765
chr18 578040 0.72% 3845
chr19 1636389 2.79% 10887
chr20 800187 1.24% 5325
chr21 441888 0.95% 2941
chr22 702971 1.38% 4681
chrX 924126 0.59% 6151
chrY 57549 0.10% 382
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 207750 2 450 150.25 150
global segment-length histogram

Files

Filename Size md5
ENCFF023ZMS.bed.gz 2.01 MB de70e3008179bc8aaad9c38f4e6f59ea
ENCFF023ZMS.tabix.bed.gz 1.73 MB e01f0448202efbb7e9cc237a6adb151c
ENCFF023ZMS.tabix.bed.gz.tbi 554.46 KB 58da1809495201b21cd7fdabba063cb0
genomic_resource.yaml 1.43 KB e33efb9b62df1e3a7608aa226b220b8f
statistics/