Resource

Id DNase-seq/ENCSR166TEEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR166TEE [biosample_summary="Homo sapiens forelimb muscle tissue female embryo (108 days)"]
Description
Labels
  • accession: ENCSR166TEE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003662/
  • biosample_summary: Homo sapiens forelimb muscle tissue female embryo (108 days)
  • date_created: 2015-09-16T21:43:03.702631+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR166TEE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (108 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR166TEE float

DNase-seq_ENCSR166TEE
DNase-seq ENCSR166TEE [biosample_summary="Homo sapiens forelimb muscle tissue female embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR166TEE [2, 1.81e+03]
n
11,926,213
mean
48.1
sd
49.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 119262130.37% 79332
chr1 1056892 0.42% 7030
chr2 956844 0.40% 6368
chr3 805732 0.41% 5356
chr4 655414 0.34% 4358
chr5 712399 0.39% 4731
chr6 742704 0.43% 4940
chr7 618865 0.39% 4115
chr8 579573 0.40% 3856
chr9 482786 0.35% 3212
chr10 598443 0.45% 3974
chr11 596013 0.44% 3966
chr12 599943 0.45% 3992
chr13 358987 0.31% 2390
chr14 388649 0.36% 2586
chr15 368435 0.36% 2454
chr16 346177 0.38% 2302
chr17 439268 0.53% 2925
chr18 278550 0.35% 1855
chr19 354450 0.60% 2358
chr20 283196 0.44% 1886
chr21 151050 0.32% 1006
chr22 180817 0.36% 1204
chrX 370426 0.24% 2464
chrY 600 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 79332 20 399 150.33 150
global segment-length histogram

Files

Filename Size md5
ENCFF850STV.bed.gz 772.58 KB dc3f6cfddd713904313ec84f51896220
ENCFF850STV.tabix.bed.gz 661.51 KB a99b80cf3a50f138c2a2de3472c61e96
ENCFF850STV.tabix.bed.gz.tbi 418.42 KB c63f8b70370d51df2ca1d23363052e72
genomic_resource.yaml 1.42 KB 77ac6f4c9bda9b6696a23663ab4306fc
statistics/