Resource
| Id | DNase-seq/ENCSR164WOF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR164WOF [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (37 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Released analysis {ENCAN565GEU|/analyses/ENCAN565GEU/} has in progress subobject document {232a2e2d-8999-4fc3-930e-8445ac6d062f|/documents/232a2e2d-8999-4fc3-930e-8445ac6d062f/} audit_internal_action: Released analysis {ENCAN565GEU|/analyses/ENCAN565GEU/} has in progress subobject document {9e952ad3-d511-4710-bbad-92ffca728447|/documents/9e952ad3-d511-4710-bbad-92ffca728447/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF909FQD|/files/ENCFF909FQD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR164WOF | float |
DNase-seq_ENCSR164WOF |
DNase-seq ENCSR164WOF [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (37 years)"]
|
 |
[0.0285, 9.25] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 39098445 | 1.22% | 185651 |
| chr1 | 3715381 | 1.49% | 17279 |
| chr2 | 3458744 | 1.43% | 16321 |
| chr3 | 1715968 | 0.87% | 8373 |
| chr4 | 1243033 | 0.65% | 6012 |
| chr5 | 1631107 | 0.90% | 7916 |
| chr6 | 1332272 | 0.78% | 6586 |
| chr7 | 2113659 | 1.33% | 10156 |
| chr8 | 1485200 | 1.02% | 6898 |
| chr9 | 1739153 | 1.26% | 8125 |
| chr10 | 2426340 | 1.81% | 11407 |
| chr11 | 2696635 | 2.00% | 12308 |
| chr12 | 1502001 | 1.13% | 7454 |
| chr13 | 547249 | 0.48% | 2761 |
| chr14 | 1257436 | 1.17% | 5992 |
| chr15 | 1344470 | 1.32% | 6409 |
| chr16 | 1836992 | 2.03% | 8780 |
| chr17 | 2501079 | 3.00% | 11739 |
| chr18 | 605607 | 0.75% | 2960 |
| chr19 | 1386052 | 2.36% | 6825 |
| chr20 | 1662993 | 2.58% | 7828 |
| chr21 | 727257 | 1.56% | 3378 |
| chr22 | 1860001 | 3.66% | 8427 |
| chrX | 297708 | 0.19% | 1638 |
| chrY | 12108 | 0.02% | 79 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 185651 | 1 | 1280 | 210.6 | 199 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF889ADL.bed.gz | 1.67 MB | b7fa44e4d6ad626a9d88d51db54fba48 |
| ENCFF889ADL.tabix.bed.gz | 1.61 MB | eb63454495163a6f1cbf5a375da50fe1 |
| ENCFF889ADL.tabix.bed.gz.tbi | 219.99 KB | 1a83da2797386dedcec50dfcbe5dbe3a |
| genomic_resource.yaml | 2.5 KB | 7e3b0451550fa2dfd61372c1620eba0a |
| statistics/ |