DNase-seq_ENCSR164WOF
DNase-seq ENCSR164WOF [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR164WOF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR164WOF [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Released analysis {ENCAN565GEU|/analyses/ENCAN565GEU/} has in progress subobject document {232a2e2d-8999-4fc3-930e-8445ac6d062f|/documents/232a2e2d-8999-4fc3-930e-8445ac6d062f/} audit_internal_action: Released analysis {ENCAN565GEU|/analyses/ENCAN565GEU/} has in progress subobject document {9e952ad3-d511-4710-bbad-92ffca728447|/documents/9e952ad3-d511-4710-bbad-92ffca728447/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF909FQD|/files/ENCFF909FQD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR164WOF | float |
DNase-seq_ENCSR164WOF |
DNase-seq ENCSR164WOF [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (37 years)"]
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[0.0285, 9.25] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF889ADL.bed.gz | 1.67 MB | b7fa44e4d6ad626a9d88d51db54fba48 |
| ENCFF889ADL.bed.gz.dvc | 101.0 B | 3b1c81cb9ee7e546ba00e76c15bdb19b |
| ENCFF889ADL.tabix.bed.gz | 1.61 MB | eb63454495163a6f1cbf5a375da50fe1 |
| ENCFF889ADL.tabix.bed.gz.dvc | 107.0 B | 1bd73804bb9d329eb9a1bbd1d15d1b3c |
| ENCFF889ADL.tabix.bed.gz.tbi | 219.99 KB | 1a83da2797386dedcec50dfcbe5dbe3a |
| ENCFF889ADL.tabix.bed.gz.tbi.dvc | 110.0 B | e38cc175ba2697f6dfb7d300990a0c17 |
| genomic_resource.yaml | 2.5 KB | 7e3b0451550fa2dfd61372c1620eba0a |
| genomic_resource_original.yaml | 2.38 KB | 77cb5da09288ce4fc8d67e082b9f2aaa |
| statistics/ |