Resource

Id DNase-seq/ENCSR164TBPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR164TBP [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR164TBP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female child (16 years)
  • date_created: 2019-02-01T19:21:38.773473+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR164TBP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR164TBP float

DNase-seq_ENCSR164TBP

DNase-seq ENCSR164TBP [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"]
HISTOGRAM FOR DNase-seq_ENCSR164TBP [0.0443, 25.5]
n
15,850,493
mean
1.89
sd
2.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 158504930.49% 81111
chr1 1577002 0.63% 7986
chr2 1233161 0.51% 6384
chr3 886006 0.45% 4616
chr4 596850 0.31% 3114
chr5 744016 0.41% 3861
chr6 823546 0.48% 4245
chr7 810614 0.51% 4131
chr8 706071 0.49% 3636
chr9 757250 0.55% 3844
chr10 807731 0.60% 4175
chr11 865640 0.64% 4388
chr12 691872 0.52% 3555
chr13 324574 0.28% 1635
chr14 565642 0.53% 2871
chr15 580439 0.57% 3000
chr16 577565 0.64% 2923
chr17 844240 1.01% 4200
chr18 269640 0.34% 1441
chr19 776798 1.33% 3821
chr20 458153 0.71% 2364
chr21 213382 0.46% 1118
chr22 382504 0.75% 1948
chrX 357246 0.23% 1850
chrY 551 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81111 1 1200 195.42 187
global segment-length histogram

Files

Filename Size md5
ENCFF629FBJ.bed.gz 885.09 KB 137a9bc6b9218772c7f7787e458cddd3
ENCFF629FBJ.tabix.bed.gz 813.68 KB 754595c27d4340667746c5de8de94004
ENCFF629FBJ.tabix.bed.gz.tbi 293.8 KB 3f67297e8b69fd6beca2bfec387100b0
genomic_resource.yaml 2.06 KB d970ed45883de5f11ed1f0d4d930d6db
statistics/