DNase-seq_ENCSR164TBP
DNase-seq ENCSR164TBP [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"]
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| Id: | DNase-seq/ENCSR164TBP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR164TBP [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF892VLK|/files/ENCFF892VLK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR164TBP | float |
DNase-seq_ENCSR164TBP |
DNase-seq ENCSR164TBP [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"]
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[0.0443, 25.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF629FBJ.bed.gz | 885.09 KB | 137a9bc6b9218772c7f7787e458cddd3 |
| ENCFF629FBJ.bed.gz.dvc | 100.0 B | ef1f2f7e8e9142c049b4eadc76872ac3 |
| ENCFF629FBJ.tabix.bed.gz | 813.68 KB | 754595c27d4340667746c5de8de94004 |
| ENCFF629FBJ.tabix.bed.gz.dvc | 106.0 B | 583ab07d2488a47b605e952388f29956 |
| ENCFF629FBJ.tabix.bed.gz.tbi | 293.8 KB | 3f67297e8b69fd6beca2bfec387100b0 |
| ENCFF629FBJ.tabix.bed.gz.tbi.dvc | 110.0 B | d86eee5d70eccf4772f49989ed475934 |
| genomic_resource.yaml | 2.06 KB | d970ed45883de5f11ed1f0d4d930d6db |
| genomic_resource_original.yaml | 1.96 KB | 991b7de23949007faa16ba789936bd8d |
| statistics/ |