DNase-seq_ENCSR164PQJ
DNase-seq ENCSR164PQJ [biosample_summary="Homo sapiens thymus tissue male embryo (127 days)"]
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| Id: | DNase-seq/ENCSR164PQJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR164PQJ [biosample_summary="Homo sapiens thymus tissue male embryo (127 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (127 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN089DEA|/analyses/ENCAN089DEA/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF911BTJ|/files/ENCFF911BTJ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR164PQJ | float |
DNase-seq_ENCSR164PQJ |
DNase-seq ENCSR164PQJ [biosample_summary="Homo sapiens thymus tissue male embryo (127 days)"]
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[5, 3.38e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF221AJA.bed.gz | 923.81 KB | 2146404ab77f239ecffd216d15d7cab0 |
| ENCFF221AJA.bed.gz.dvc | 100.0 B | a5e68f4f38988797f643af7545ba1cba |
| ENCFF221AJA.tabix.bed.gz | 793.66 KB | d49d8837294bb594e5edb3b7815621c8 |
| ENCFF221AJA.tabix.bed.gz.dvc | 106.0 B | cedaa5039d56065bc9ba7d35bbd7abdc |
| ENCFF221AJA.tabix.bed.gz.tbi | 406.22 KB | ddd8eaaf6d7a5393464a31af71611af7 |
| ENCFF221AJA.tabix.bed.gz.tbi.dvc | 110.0 B | 25bb247cf9e02eaa4421765d9f178c91 |
| genomic_resource.yaml | 2.18 KB | 6b7cae1bb79feded8f014ee129b5bcc2 |
| genomic_resource_original.yaml | 2.09 KB | a0bf22a7f215e470c98a0a311aef9a1a |
| statistics/ |