Resource

Id DNase-seq/ENCSR163QXScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR163QXS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR163QXS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:50.261111+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR163QXS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR163QXS float

DNase-seq_ENCSR163QXS
DNase-seq ENCSR163QXS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR163QXS [0.315, 49.4]
n
6,590,507
mean
6.39
sd
6.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 65905070.20% 36192
chr1 674705 0.27% 3681
chr2 461216 0.19% 2536
chr3 359078 0.18% 1985
chr4 219903 0.12% 1221
chr5 296755 0.16% 1642
chr6 378411 0.22% 2071
chr7 306849 0.19% 1689
chr8 245474 0.17% 1375
chr9 252291 0.18% 1413
chr10 278984 0.21% 1536
chr11 352425 0.26% 1920
chr12 342108 0.26% 1859
chr13 137350 0.12% 747
chr14 239590 0.22% 1322
chr15 213013 0.21% 1188
chr16 265512 0.29% 1457
chr17 401255 0.48% 2193
chr18 97164 0.12% 532
chr19 444803 0.76% 2356
chr20 179324 0.28% 1002
chr21 82741 0.18% 461
chr22 158362 0.31% 888
chrX 203194 0.13% 1118
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36192 9 640 182.1 180
global segment-length histogram

Files

Filename Size md5
ENCFF158FJL.bed.gz 398.51 KB 2354f6d572616d8186bf9f9debecfae8
ENCFF158FJL.tabix.bed.gz 360.66 KB 8b384383ca61d3ad66de37568b0ad772
ENCFF158FJL.tabix.bed.gz.tbi 202.54 KB 72d9cca5d77e88c4890dd183272b235f
genomic_resource.yaml 1.88 KB ebe3eb71c4ca0d20c221f53dd0f1bec1
statistics/