DNase-seq_ENCSR163QXS
DNase-seq ENCSR163QXS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
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| Id: | DNase-seq/ENCSR163QXS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR163QXS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: peaks audit_warning: Alignment file {ENCFF647HTV|/files/ENCFF647HTV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31942180 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR163QXS | float |
DNase-seq_ENCSR163QXS |
DNase-seq ENCSR163QXS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
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[0.315, 49.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF158FJL.bed.gz | 398.51 KB | 2354f6d572616d8186bf9f9debecfae8 |
| ENCFF158FJL.bed.gz.dvc | 100.0 B | 6021ff11c4072bf31afed9f7f6100fd8 |
| ENCFF158FJL.tabix.bed.gz | 360.66 KB | 8b384383ca61d3ad66de37568b0ad772 |
| ENCFF158FJL.tabix.bed.gz.dvc | 106.0 B | 070b706042bf919b0cf15f77b6877b38 |
| ENCFF158FJL.tabix.bed.gz.tbi | 202.54 KB | 72d9cca5d77e88c4890dd183272b235f |
| ENCFF158FJL.tabix.bed.gz.tbi.dvc | 110.0 B | 9a2e600960adef555eeaf44c2a68d760 |
| genomic_resource.yaml | 1.88 KB | ebe3eb71c4ca0d20c221f53dd0f1bec1 |
| genomic_resource_original.yaml | 1.77 KB | 6612be07cc3b82cb2486a248d57d477c |
| statistics/ |