Resource

Id DNase-seq/ENCSR163PKTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR163PKT [biosample_summary="Homo sapiens stomach tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR163PKT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (54 years)
  • date_created: 2016-12-27T19:58:32.708681+00:00
  • date_released: 2017-10-01
  • doi: 10.17989/ENCSR163PKT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR163PKT float

DNase-seq_ENCSR163PKT
DNase-seq ENCSR163PKT [biosample_summary="Homo sapiens stomach tissue male adult (54 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR163PKT [5, 1.74e+04]
n
35,432,197
mean
78.4
sd
116

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 354321971.10% 235109
chr1 3309070 1.33% 21980
chr2 3326703 1.37% 22075
chr3 2160720 1.09% 14343
chr4 1210232 0.64% 8035
chr5 1901517 1.05% 12618
chr6 1895546 1.11% 12567
chr7 1699851 1.07% 11281
chr8 1656301 1.14% 10987
chr9 1419788 1.03% 9417
chr10 2317779 1.73% 15374
chr11 1962501 1.45% 13015
chr12 1309658 0.98% 8694
chr13 946661 0.83% 6268
chr14 1143980 1.07% 7584
chr15 1409820 1.38% 9346
chr16 1184406 1.31% 7859
chr17 1309912 1.57% 8710
chr18 989694 1.23% 6567
chr19 1121725 1.91% 7448
chr20 1217104 1.89% 8078
chr21 602390 1.29% 3991
chr22 790533 1.56% 5258
chrX 490552 0.31% 3245
chrY 55754 0.10% 369
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 235109 3 450 150.71 150
global segment-length histogram

Files

Filename Size md5
ENCFF229RBJ.bed.gz 2.12 MB d063f456a24a1a507d417b245ccab9f9
ENCFF229RBJ.tabix.bed.gz 1.83 MB baf050b24d9d2c3ca9582ed66653f6a1
ENCFF229RBJ.tabix.bed.gz.tbi 397.98 KB c61d14ad8a6bb735b7a57cf375e4c459
genomic_resource.yaml 1.38 KB 6a3891e050ce7c02cdeb0d4184281720
statistics/