Resource

Id DNase-seq/ENCSR162JNVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR162JNV [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR162JNV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-20T23:45:24.218047+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR162JNV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR162JNV float

DNase-seq_ENCSR162JNV
DNase-seq ENCSR162JNV [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR162JNV [0.415, 44.9]
n
6,430,626
mean
6.03
sd
5.57

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 64306260.20% 34635
chr1 656576 0.26% 3537
chr2 435827 0.18% 2349
chr3 343338 0.17% 1841
chr4 223054 0.12% 1176
chr5 279701 0.15% 1516
chr6 358261 0.21% 1908
chr7 301773 0.19% 1633
chr8 232225 0.16% 1284
chr9 259675 0.19% 1412
chr10 277656 0.21% 1501
chr11 330682 0.24% 1814
chr12 324039 0.24% 1737
chr13 127485 0.11% 669
chr14 222779 0.21% 1190
chr15 214903 0.21% 1157
chr16 270027 0.30% 1456
chr17 406138 0.49% 2199
chr18 96730 0.12% 526
chr19 467321 0.80% 2431
chr20 183018 0.28% 1016
chr21 73416 0.16% 397
chr22 162811 0.32% 903
chrX 175612 0.11% 943
chrY 7579 0.01% 40
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34635 3 680 185.67 180
global segment-length histogram

Files

Filename Size md5
ENCFF017FZE.bed.gz 379.87 KB 8abcd16f948d56a537296a37a26bd987
ENCFF017FZE.tabix.bed.gz 344.05 KB db98e5a93a13f430b6825fdc8c0a4049
ENCFF017FZE.tabix.bed.gz.tbi 190.42 KB f4586f53325b90472fd41771f3f6eba9
genomic_resource.yaml 1.87 KB 7cd4aefcdcb3b48df791927aca99aca0
statistics/