Resource

Id DNase-seq/ENCSR161ZGAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR161ZGA [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR161ZGA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with Cognitive impairment, Alzheimer's disease; head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2021-04-01T15:48:57.380211+00:00
  • date_released: 2021-06-17
  • doi: 10.17989/ENCSR161ZGA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Cognitive impairment, Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR161ZGA float

DNase-seq_ENCSR161ZGA
DNase-seq ENCSR161ZGA [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR161ZGA [0.0482, 26.6]
n
21,809,172
mean
1.88
sd
2.42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 218091720.68% 116286
chr1 2021298 0.81% 10690
chr2 1788651 0.74% 9565
chr3 1217884 0.61% 6514
chr4 817708 0.43% 4374
chr5 1092220 0.60% 5879
chr6 1087976 0.64% 5847
chr7 1075047 0.67% 5781
chr8 939268 0.65% 5100
chr9 972252 0.70% 5168
chr10 1175442 0.88% 6288
chr11 1221394 0.90% 6471
chr12 963624 0.72% 5104
chr13 455334 0.40% 2480
chr14 718868 0.67% 3847
chr15 825228 0.81% 4389
chr16 842997 0.93% 4506
chr17 1104285 1.33% 5783
chr18 466598 0.58% 2497
chr19 997627 1.70% 5134
chr20 665909 1.03% 3579
chr21 263920 0.57% 1419
chr22 605512 1.19% 3218
chrX 489132 0.31% 2644
chrY 998 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116286 1 931 187.55 180
global segment-length histogram

Files

Filename Size md5
ENCFF658FWW.bed.gz 1.24 MB 04d0723a1aab389e598dcacf09339610
ENCFF658FWW.tabix.bed.gz 1.13 MB 686579508919ca2c88617a78103c8e67
ENCFF658FWW.tabix.bed.gz.tbi 415.3 KB 3ffc84fe4a33dab836567b5e7c006a1b
genomic_resource.yaml 1.56 KB 2a9d36fcf1e0f4ce3d2b31748133d783
statistics/