DNase-seq_ENCSR160VHJ
DNase-seq ENCSR160VHJ [biosample_summary="Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (36 years)"]
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| Id: | DNase-seq/ENCSR160VHJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR160VHJ [biosample_summary="Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (36 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (36 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF500RTP|/files/ENCFF500RTP/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR160VHJ | float |
DNase-seq_ENCSR160VHJ |
DNase-seq ENCSR160VHJ [biosample_summary="Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (36 years)"]
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[0.0652, 34.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF449AXZ.bed.gz | 501.79 KB | 47567feaae201833332536b5eb3c2c79 |
| ENCFF449AXZ.bed.gz.dvc | 100.0 B | 8290f32fd3c63cf5b11b8e29828a0c2f |
| ENCFF449AXZ.tabix.bed.gz | 461.11 KB | 136e970af255fd96330b435d1e17ad59 |
| ENCFF449AXZ.tabix.bed.gz.dvc | 106.0 B | d60b40a584e6a7a2a0e20fbce5ffc8d7 |
| ENCFF449AXZ.tabix.bed.gz.tbi | 208.12 KB | 092d7cb0f4f0a47d3f6f3709fe7637ee |
| ENCFF449AXZ.tabix.bed.gz.tbi.dvc | 110.0 B | 3bcf81f7e0e064bc1a08b6387cfedccb |
| genomic_resource.yaml | 2.11 KB | 1ba83603e8202138df0b923f79460921 |
| genomic_resource_original.yaml | 1.99 KB | 0474ded78c81c8a8c601695d3d38e277 |
| statistics/ |