DNase-seq_ENCSR158YXM
DNase-seq ENCSR158YXM [biosample_summary="Homo sapiens liver tissue embryo (59 days) and embryo (80 days)"]
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| Id: | DNase-seq/ENCSR158YXM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR158YXM [biosample_summary="Homo sapiens liver tissue embryo (59 days) and embryo (80 days)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: embryo (80 days) embryo (59 days) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF454GBD|/files/ENCFF454GBD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.19. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF093KQP|/files/ENCFF093KQP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.23. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR158YXM | float |
DNase-seq_ENCSR158YXM |
DNase-seq ENCSR158YXM [biosample_summary="Homo sapiens liver tissue embryo (59 days) and embryo (80 days)"]
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[0.0247, 18.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF760SUM.bed.gz | 1.02 MB | 47896a6df6746575ae7544ddff4e42c8 |
| ENCFF760SUM.bed.gz.dvc | 101.0 B | 35f5a0f5d7ad2c48b68d4abe63455702 |
| ENCFF760SUM.tabix.bed.gz | 955.15 KB | 9bf1a8578a8f20079cb1ebc14c81c3de |
| ENCFF760SUM.tabix.bed.gz.dvc | 106.0 B | c853c0a85d5a683b19fcc4ff84ab2ff5 |
| ENCFF760SUM.tabix.bed.gz.tbi | 374.12 KB | 1b4ea75b094b5659bb451e4f9921ea63 |
| ENCFF760SUM.tabix.bed.gz.tbi.dvc | 110.0 B | 8bb45e55599cb942099da1730650be13 |
| genomic_resource.yaml | 2.9 KB | fce268a0a46177c9a9c249d7a25bff1e |
| genomic_resource_original.yaml | 2.79 KB | d44ecb2b54f12dfe4cc0eb4b436e44c5 |
| statistics/ |