DNase-seq_ENCSR154OUQ
DNase-seq ENCSR154OUQ [biosample_summary="Homo sapiens omental fat pad tissue female adult (53 years)"]
×
| Id: | DNase-seq/ENCSR154OUQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR154OUQ [biosample_summary="Homo sapiens omental fat pad tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF550NDG|/files/ENCFF550NDG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.17. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN441AYY|/analyses/ENCAN441AYY/} has in progress subobject document {5875db66-6999-428c-a8e6-e4efefbb81cb|/documents/5875db66-6999-428c-a8e6-e4efefbb81cb/} |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR154OUQ | float |
DNase-seq_ENCSR154OUQ |
DNase-seq ENCSR154OUQ [biosample_summary="Homo sapiens omental fat pad tissue female adult (53 years)"]
|
|
[0.03, 8.22] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF933ASP.bed.gz | 2.21 MB | 4221e5733ba7e164272ddac9012ba743 |
| ENCFF933ASP.bed.gz.dvc | 101.0 B | a4e860818db1e64a65eb369b6d5bf43a |
| ENCFF933ASP.tabix.bed.gz | 2.14 MB | 79ea37029aee1c47d1dd2e7ae5762d84 |
| ENCFF933ASP.tabix.bed.gz.dvc | 107.0 B | 8c6b842dd289c95d78f6d946d21e8a03 |
| ENCFF933ASP.tabix.bed.gz.tbi | 250.77 KB | 00c2467725fb3cdc4ede61f9cf2042be |
| ENCFF933ASP.tabix.bed.gz.tbi.dvc | 110.0 B | 2b2afb022312c11844bb34c39148f45d |
| genomic_resource.yaml | 2.26 KB | 34a92cc981d52d13a628c89554ca0e2c |
| genomic_resource_original.yaml | 2.16 KB | d7bc3e60db80acc3e6612c7efb57e352 |
| statistics/ |