Resource

Id DNase-seq/ENCSR154NYMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR154NYM [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours"]
Description
Labels
  • accession: ENCSR154NYM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000667/
  • biosample_summary: Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours
  • date_created: 2021-08-31T15:47:27.481453+00:00
  • date_released: 2021-09-10
  • doi: 10.17989/ENCSR154NYM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (36 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR154NYM float

DNase-seq_ENCSR154NYM
DNase-seq ENCSR154NYM [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR154NYM [0.0376, 59]
n
18,505,465
mean
3.57
sd
5.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 185054650.58% 90381
chr1 1815805 0.73% 8700
chr2 1422189 0.59% 7030
chr3 1032941 0.52% 5095
chr4 666759 0.35% 3293
chr5 886891 0.49% 4381
chr6 1067292 0.62% 5191
chr7 857909 0.54% 4265
chr8 758660 0.52% 3786
chr9 775001 0.56% 3804
chr10 864155 0.65% 4242
chr11 959948 0.71% 4669
chr12 879504 0.66% 4285
chr13 364138 0.32% 1790
chr14 637085 0.60% 3130
chr15 601592 0.59% 2973
chr16 703452 0.78% 3408
chr17 1068487 1.28% 5077
chr18 307592 0.38% 1537
chr19 968098 1.65% 4575
chr20 516475 0.80% 2563
chr21 241361 0.52% 1183
chr22 455429 0.90% 2227
chrX 618906 0.40% 3000
chrY 35796 0.06% 177
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 90381 1 1040 204.75 200
global segment-length histogram

Files

Filename Size md5
ENCFF477UFH.bed.gz 1006.34 KB a2ce1a276bbd0e46cad01a8a548c5d11
ENCFF477UFH.tabix.bed.gz 930.02 KB 50453c984dbfb49dcae2fea8cb7c1545
ENCFF477UFH.tabix.bed.gz.tbi 325.98 KB fe148e82f237d05b070eeed45abe4159
genomic_resource.yaml 1.85 KB 7c01efcd62f45155c77084b1ae8fb1b7
statistics/