| Id: | DNase-seq/ENCSR154NOT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR154NOT [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF879KDW|/files/ENCFF879KDW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR154NOT | float |
DNase-seq_ENCSR154NOT |
DNase-seq ENCSR154NOT [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
|
 |
[0.18, 24] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF659TJW.bed.gz | 559.42 KB | a4c9cb77ed1f6fc2fe957d0765ce7397 |
| ENCFF659TJW.bed.gz.dvc | 100.0 B | 340d1ab80b1ebc0b82ca895cfafd47a7 |
| ENCFF659TJW.tabix.bed.gz | 507.46 KB | 9edd19b1d7a06f32ef2c5a823493460a |
| ENCFF659TJW.tabix.bed.gz.dvc | 106.0 B | 3ef0bcf193d994d9409d708869e61153 |
| ENCFF659TJW.tabix.bed.gz.tbi | 254.04 KB | bbf2e0a0674f734a23a51c96180b2762 |
| ENCFF659TJW.tabix.bed.gz.tbi.dvc | 110.0 B | bc30a32660c7ff16480e10150c0dd6b4 |
| genomic_resource.yaml | 2.6 KB | e26e6dfc08b06168d394c082a6971f4e |
| genomic_resource_original.yaml | 2.39 KB | 130c32fc332e5102c0eb2e1a68d7f48a |
| statistics/ |