Resource

Id DNase-seq/ENCSR153LHPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR153LHP [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
Description
Labels
  • accession: ENCSR153LHP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-16T21:42:14.741530+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR153LHP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR153LHP float

DNase-seq_ENCSR153LHP

DNase-seq ENCSR153LHP [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
HISTOGRAM FOR DNase-seq_ENCSR153LHP [0.0197, 27.7]
n
56,991,953
mean
1.63
sd
2.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 569919531.77% 305356
chr1 5247292 2.11% 28184
chr2 4739712 1.96% 25400
chr3 3866676 1.95% 20799
chr4 3039851 1.60% 16429
chr5 3399165 1.87% 18250
chr6 3622975 2.12% 19315
chr7 2874778 1.80% 15471
chr8 2757101 1.90% 14824
chr9 2473289 1.79% 13240
chr10 2690012 2.01% 14430
chr11 2775651 2.05% 14798
chr12 2887295 2.17% 15403
chr13 1621342 1.42% 8702
chr14 1708493 1.60% 9166
chr15 1814459 1.78% 9654
chr16 1645124 1.82% 8753
chr17 2268859 2.73% 12000
chr18 1316578 1.64% 7140
chr19 1633289 2.79% 8495
chr20 1401363 2.17% 7500
chr21 629402 1.35% 3394
chr22 892828 1.76% 4788
chrX 1621000 1.04% 8855
chrY 65419 0.11% 366
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 305356 2 960 186.64 180
global segment-length histogram

Files

Filename Size md5
ENCFF119TMJ.bed.gz 3.3 MB 0fc55545f9de8c3899af3125abc28782
ENCFF119TMJ.tabix.bed.gz 3.02 MB 80bb12e9b3889861bfef83e836227dc1
ENCFF119TMJ.tabix.bed.gz.tbi 717.3 KB dcc7cec303d0663c46f9b779235a9ce6
genomic_resource.yaml 1.17 KB b2b7a561dc79914da84508a92cd7119d
statistics/