DNase-seq_ENCSR152FWD
DNase-seq ENCSR152FWD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-15 for 4 hours"]
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| Id: | DNase-seq/ENCSR152FWD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR152FWD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-15 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (39 years) treated with Interleukin-15 for 4 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF241PKF|/files/ENCFF241PKF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR152FWD | float |
DNase-seq_ENCSR152FWD |
DNase-seq ENCSR152FWD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-15 for 4 hours"]
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[0.0688, 52.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF955TKY.bed.gz | 842.63 KB | afb079a9477c824ea9278f8b44e20a28 |
| ENCFF955TKY.bed.gz.dvc | 100.0 B | 7ace9b75be73efa184f34464214e31a3 |
| ENCFF955TKY.tabix.bed.gz | 775.37 KB | 22d48bf6cb07f14b6edd806ef5cea3d0 |
| ENCFF955TKY.tabix.bed.gz.dvc | 106.0 B | fa52d17f8c7275d739e4d746f34a7bb5 |
| ENCFF955TKY.tabix.bed.gz.tbi | 308.69 KB | fc45e62b8bef647360bf5cc40d960901 |
| ENCFF955TKY.tabix.bed.gz.tbi.dvc | 110.0 B | 6abd8ac7fed12447e09dea1e9c4f7bae |
| genomic_resource.yaml | 2.29 KB | 6a8d8a0455b6cffa7a15a0ff34683fa1 |
| genomic_resource_original.yaml | 2.13 KB | 19a9a7dac2a2fcc8ac10301be4d563b3 |
| statistics/ |