| Id: | DNase-seq/ENCSR152AVY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR152AVY [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF516JCR|/files/ENCFF516JCR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 20410342 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR152AVY | float |
DNase-seq_ENCSR152AVY |
DNase-seq ENCSR152AVY [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour"]
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[0.393, 57.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF781UMD.bed.gz | 366.38 KB | df89f1ee22cbd553b903a6ba500a8b46 |
| ENCFF781UMD.bed.gz.dvc | 100.0 B | 4eb26e17e2c2928786fd6ca67bc96fca |
| ENCFF781UMD.tabix.bed.gz | 331.56 KB | de275cbea6d47c6d4b76cfc5854a138e |
| ENCFF781UMD.tabix.bed.gz.dvc | 106.0 B | 19ed1b25dccc378cb07a1aec768b0940 |
| ENCFF781UMD.tabix.bed.gz.tbi | 186.43 KB | d5a4be4c8d217eac1a1624909239973d |
| ENCFF781UMD.tabix.bed.gz.tbi.dvc | 110.0 B | be59318aeec87893694be31f69bfd5cc |
| genomic_resource.yaml | 2.62 KB | b6a93458d270a15f90a0b7c02d26f658 |
| genomic_resource_original.yaml | 2.37 KB | 209ccd815b9aa4219117f9622fe9eab7 |
| statistics/ |