Resource

Id DNase-seq/ENCSR152AVYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR152AVY [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour"]
Description
Labels
  • accession: ENCSR152AVY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour
  • date_created: 2020-04-19T18:36:53.081051+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR152AVY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR152AVY float

DNase-seq_ENCSR152AVY
DNase-seq ENCSR152AVY [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR152AVY [0.393, 57.1]
n
6,125,864
mean
8.04
sd
6.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 61258640.19% 33659
chr1 633632 0.25% 3473
chr2 418258 0.17% 2312
chr3 325689 0.16% 1786
chr4 220863 0.12% 1190
chr5 275932 0.15% 1532
chr6 343539 0.20% 1898
chr7 275532 0.17% 1521
chr8 218247 0.15% 1219
chr9 251188 0.18% 1394
chr10 262198 0.20% 1442
chr11 316052 0.23% 1721
chr12 314102 0.24% 1726
chr13 121140 0.11% 646
chr14 212724 0.20% 1179
chr15 209585 0.21% 1147
chr16 258516 0.29% 1425
chr17 379424 0.46% 2080
chr18 88749 0.11% 496
chr19 448127 0.76% 2389
chr20 169975 0.26% 958
chr21 70422 0.15% 394
chr22 148562 0.29% 830
chrX 159184 0.10% 878
chrY 4224 0.01% 23
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33659 8 820 182 180
global segment-length histogram

Files

Filename Size md5
ENCFF781UMD.bed.gz 366.38 KB df89f1ee22cbd553b903a6ba500a8b46
ENCFF781UMD.tabix.bed.gz 331.56 KB de275cbea6d47c6d4b76cfc5854a138e
ENCFF781UMD.tabix.bed.gz.tbi 186.43 KB d5a4be4c8d217eac1a1624909239973d
genomic_resource.yaml 2.62 KB b6a93458d270a15f90a0b7c02d26f658
statistics/