Resource

Id DNase-seq/ENCSR149XILcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR149XIL [biosample_summary="Homo sapiens HepG2"]
Description
Labels
  • accession: ENCSR149XIL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001187/
  • biosample_summary: Homo sapiens HepG2
  • date_created: 2014-06-20T22:06:24.702086+00:00
  • date_released: 2015-08-18
  • doi: 10.17989/ENCSR149XIL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR149XIL float

DNase-seq_ENCSR149XIL
DNase-seq ENCSR149XIL [biosample_summary="Homo sapiens HepG2"]
 HISTOGRAM FOR DNase-seq_ENCSR149XIL [2, 150]
n
26,573,000
mean
60.1
sd
32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 265730000.83% 185972
chr1 2465550 0.99% 17290
chr2 2276710 0.94% 15919
chr3 1656380 0.84% 11525
chr4 1158470 0.61% 8128
chr5 1322670 0.73% 9172
chr6 1685440 0.99% 11773
chr7 1315940 0.83% 9409
chr8 1104030 0.76% 7692
chr9 1076800 0.78% 7532
chr10 1240330 0.93% 8692
chr11 1249270 0.92% 8703
chr12 1296710 0.97% 9041
chr13 636660 0.56% 4418
chr14 923030 0.86% 6408
chr15 822530 0.81% 5756
chr16 1055410 1.17% 7493
chr17 1316240 1.58% 9245
chr18 557710 0.69% 3850
chr19 985340 1.68% 6978
chr20 868390 1.35% 5998
chr21 292960 0.63% 2032
chr22 532240 1.05% 3732
chrX 698840 0.45% 4911
chrY 35350 0.06% 275
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 185972 10 290 142.89 150
global segment-length histogram

Files

Filename Size md5
ENCFF268DTI.bed.gz 1.6 MB d1e29bfd50534a41e8224bc4da2789a4
ENCFF268DTI.tabix.bed.gz 1.46 MB 9983649849ba115f0f8e4562024e868d
ENCFF268DTI.tabix.bed.gz.tbi 572.95 KB d1a5c68b8a129e3866fc7d2eae2c9880
genomic_resource.yaml 1.06 KB 3956a0da62bdb079f021eaf5918fc426
statistics/