| Id: | DNase-seq/ENCSR147QLU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR147QLU [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF265GNJ|/files/ENCFF265GNJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47894456 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR147QLU | float |
DNase-seq_ENCSR147QLU |
DNase-seq ENCSR147QLU [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
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[0.167, 80.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF500BBB.bed.gz | 710.78 KB | 51cba835d7edd8e9c458c1131277039e |
| ENCFF500BBB.bed.gz.dvc | 100.0 B | 1aaa9eef7fb26f12dd238483093340cd |
| ENCFF500BBB.tabix.bed.gz | 645.08 KB | 464bd01e19eb3d51111188f49c20a546 |
| ENCFF500BBB.tabix.bed.gz.dvc | 106.0 B | 51971b2bf0545fbf10c347e0f024f591 |
| ENCFF500BBB.tabix.bed.gz.tbi | 282.46 KB | 9f2b7dc1073b24bc633990f6055bc268 |
| ENCFF500BBB.tabix.bed.gz.tbi.dvc | 110.0 B | 9176c0001443e7b256706825ebd14b6d |
| genomic_resource.yaml | 2.42 KB | 32d67eb95854c6e34afa992ba0a87d3b |
| genomic_resource_original.yaml | 2.2 KB | a729b631822b2dc2888eaf0e2c19da2e |
| statistics/ |