DNase-seq_ENCSR146KFX
DNase-seq ENCSR146KFX [biosample_summary="Homo sapiens astrocyte"]
×
| Id: | DNase-seq/ENCSR146KFX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR146KFX [biosample_summary="Homo sapiens astrocyte"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF639ETA|/files/ENCFF639ETA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR146KFX | float |
DNase-seq_ENCSR146KFX |
DNase-seq ENCSR146KFX [biosample_summary="Homo sapiens astrocyte"]
|
|
[0.0413, 13.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF360YFM.bed.gz | 1007.35 KB | 0df3aecd1ac8c5136131ad8cbc784c0c |
| ENCFF360YFM.bed.gz.dvc | 101.0 B | 67c40aa114768377b80dc807c54ead8a |
| ENCFF360YFM.tabix.bed.gz | 962.31 KB | 8ef0509d2ac0ab55b8c3e26c79573d20 |
| ENCFF360YFM.tabix.bed.gz.dvc | 106.0 B | 0edf11c9e66d5db9c311660b40309bf3 |
| ENCFF360YFM.tabix.bed.gz.tbi | 160.95 KB | 3d2a23a2b3692bc8ebc34a730731c29a |
| ENCFF360YFM.tabix.bed.gz.tbi.dvc | 110.0 B | 7d01a3c1009b0f41e55b75b2721a1603 |
| genomic_resource.yaml | 1.95 KB | f2f60da5613ccf6c743f8a45d1c813fc |
| genomic_resource_original.yaml | 1.88 KB | 8d9c9c19c057167e3db42623757b7114 |
| statistics/ |