Resource
| Id | DNase-seq/ENCSR146KFX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR146KFX [biosample_summary="Homo sapiens astrocyte"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF639ETA|/files/ENCFF639ETA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR146KFX | float |
DNase-seq_ENCSR146KFX |
DNase-seq ENCSR146KFX [biosample_summary="Homo sapiens astrocyte"]
|
 |
[0.0413, 13.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 22356940 | 0.69% | 107627 |
| chr1 | 2054493 | 0.83% | 9712 |
| chr2 | 1954488 | 0.81% | 9334 |
| chr3 | 1095670 | 0.55% | 5262 |
| chr4 | 653075 | 0.34% | 3097 |
| chr5 | 956680 | 0.53% | 4562 |
| chr6 | 726851 | 0.43% | 3574 |
| chr7 | 1241628 | 0.78% | 5960 |
| chr8 | 981486 | 0.68% | 4678 |
| chr9 | 941885 | 0.68% | 4642 |
| chr10 | 1450625 | 1.08% | 6955 |
| chr11 | 1393427 | 1.03% | 6526 |
| chr12 | 879821 | 0.66% | 4408 |
| chr13 | 319175 | 0.28% | 1557 |
| chr14 | 832139 | 0.78% | 3946 |
| chr15 | 852809 | 0.84% | 4180 |
| chr16 | 1051889 | 1.16% | 5210 |
| chr17 | 1345365 | 1.62% | 6521 |
| chr18 | 320057 | 0.40% | 1544 |
| chr19 | 754027 | 1.29% | 3702 |
| chr20 | 916855 | 1.42% | 4527 |
| chr21 | 443478 | 0.95% | 2060 |
| chr22 | 924919 | 1.82% | 4305 |
| chrX | 262232 | 0.17% | 1338 |
| chrY | 3866 | 0.01% | 27 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107627 | 1 | 1120 | 207.73 | 198 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF360YFM.bed.gz | 1007.35 KB | 0df3aecd1ac8c5136131ad8cbc784c0c |
| ENCFF360YFM.tabix.bed.gz | 962.31 KB | 8ef0509d2ac0ab55b8c3e26c79573d20 |
| ENCFF360YFM.tabix.bed.gz.tbi | 160.95 KB | 3d2a23a2b3692bc8ebc34a730731c29a |
| genomic_resource.yaml | 1.95 KB | f2f60da5613ccf6c743f8a45d1c813fc |
| statistics/ |