Resource

Id DNase-seq/ENCSR144NXIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR144NXI [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR144NXI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-20T23:45:45.946930+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR144NXI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR144NXI float

DNase-seq_ENCSR144NXI
DNase-seq ENCSR144NXI [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR144NXI [0.059, 50.7]
n
18,757,042
mean
3.5
sd
4.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 187570420.58% 95434
chr1 1844567 0.74% 9338
chr2 1357269 0.56% 7008
chr3 1024100 0.52% 5227
chr4 643105 0.34% 3285
chr5 850981 0.47% 4367
chr6 1121159 0.66% 5706
chr7 871476 0.55% 4459
chr8 741066 0.51% 3810
chr9 780609 0.56% 3967
chr10 880403 0.66% 4512
chr11 960338 0.71% 4931
chr12 922189 0.69% 4615
chr13 378188 0.33% 1944
chr14 621781 0.58% 3203
chr15 632906 0.62% 3270
chr16 774194 0.86% 3872
chr17 1097869 1.32% 5456
chr18 323709 0.40% 1687
chr19 1095733 1.87% 5389
chr20 544694 0.85% 2821
chr21 241096 0.52% 1212
chr22 452880 0.89% 2286
chrX 576647 0.37% 2958
chrY 20083 0.04% 111
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95434 1 1120 196.54 180
global segment-length histogram

Files

Filename Size md5
ENCFF060RFP.bed.gz 1.03 MB af512513ab9fa6b59b280371455f34a8
ENCFF060RFP.tabix.bed.gz 971.29 KB 60bef009c3263ced03059c2d34b27bed
ENCFF060RFP.tabix.bed.gz.tbi 339.24 KB 635a1116456ea06c5a1dd026185f61db
genomic_resource.yaml 1.78 KB 549dca3f24a926eee855a2d778bdb5ba
statistics/