Resource

Id DNase-seq/ENCSR141VGAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR141VGA [biosample_summary="Homo sapiens lung tissue female embryo (85 days)"]
Description
Labels
  • accession: ENCSR141VGA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue female embryo (85 days)
  • date_created: 2015-09-16T21:42:44.490133+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR141VGA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (85 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR141VGA float

DNase-seq_ENCSR141VGA
DNase-seq ENCSR141VGA [biosample_summary="Homo sapiens lung tissue female embryo (85 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR141VGA [0.0243, 38.5]
n
56,331,969
mean
1.48
sd
2.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 563319691.75% 288257
chr1 4903657 1.97% 25039
chr2 4739022 1.96% 24424
chr3 3787693 1.91% 19427
chr4 3169875 1.67% 16342
chr5 3340331 1.84% 17148
chr6 3465314 2.03% 17687
chr7 2983148 1.87% 15311
chr8 2687893 1.85% 13865
chr9 2370430 1.71% 12033
chr10 2833461 2.12% 14398
chr11 2748649 2.03% 14093
chr12 2691226 2.02% 13671
chr13 1749779 1.53% 8955
chr14 1741365 1.63% 8857
chr15 1800945 1.77% 9170
chr16 1664030 1.84% 8500
chr17 2104471 2.53% 10648
chr18 1425702 1.77% 7286
chr19 1421874 2.43% 7060
chr20 1415760 2.20% 7259
chr21 674362 1.44% 3419
chr22 855172 1.68% 4413
chrX 1756198 1.13% 9240
chrY 1612 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 288257 1 1120 195.42 189
global segment-length histogram

Files

Filename Size md5
ENCFF700LFU.bed.gz 3.08 MB e0999ce0bec8f86b1c3df0ac614df26e
ENCFF700LFU.tabix.bed.gz 2.81 MB 113416e8b4f38332dba75bda1042879e
ENCFF700LFU.tabix.bed.gz.tbi 788.58 KB 5ba4cccb537ae84a06c847c0f8493c93
genomic_resource.yaml 1.2 KB 71f8d9726da4e85de2f75f0cd8757a91
statistics/