Resource

Id DNase-seq/ENCSR141RSNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR141RSN [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
Description
Labels
  • accession: ENCSR141RSN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000504/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • date_created: 2019-08-24T00:09:40.864991+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR141RSN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR141RSN float

DNase-seq_ENCSR141RSN
DNase-seq ENCSR141RSN [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
 HISTOGRAM FOR DNase-seq_ENCSR141RSN [0.035, 43.7]
n
25,182,872
mean
1.95
sd
3.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 251828720.78% 127499
chr1 2477868 1.00% 12334
chr2 2256585 0.93% 11495
chr3 1392611 0.70% 7103
chr4 715591 0.38% 3653
chr5 1245972 0.69% 6306
chr6 1357803 0.79% 6923
chr7 1167861 0.73% 5901
chr8 1022579 0.70% 5199
chr9 1131992 0.82% 5695
chr10 1420892 1.06% 7197
chr11 1257252 0.93% 6396
chr12 1011989 0.76% 5220
chr13 496421 0.43% 2553
chr14 886160 0.83% 4494
chr15 953994 0.94% 4977
chr16 957770 1.06% 4785
chr17 1293104 1.55% 6481
chr18 435288 0.54% 2262
chr19 1111400 1.90% 5533
chr20 869398 1.35% 4379
chr21 403240 0.86% 1996
chr22 761073 1.50% 3754
chrX 535995 0.34% 2757
chrY 20034 0.04% 106
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 127499 1 1140 197.51 186
global segment-length histogram

Files

Filename Size md5
ENCFF792PYU.bed.gz 1.32 MB 5c4612f875baedcac1287f0f51d0756e
ENCFF792PYU.tabix.bed.gz 1.22 MB 557e459978ea31e023f81569ddcfa3fb
ENCFF792PYU.tabix.bed.gz.tbi 317.06 KB 2f8a9e97284bc2eca00bacf810ef1156
genomic_resource.yaml 1.79 KB bb88587017a6020354679d76d38f5055
statistics/