Resource

Id DNase-seq/ENCSR141NSQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR141NSQ [biosample_summary="Homo sapiens muscle of back tissue male embryo (104 days)"]
Description
Labels
  • accession: ENCSR141NSQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue male embryo (104 days)
  • date_created: 2015-09-16T21:42:57.687909+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR141NSQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (104 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR141NSQ float

DNase-seq_ENCSR141NSQ

DNase-seq ENCSR141NSQ [biosample_summary="Homo sapiens muscle of back tissue male embryo (104 days)"]
HISTOGRAM FOR DNase-seq_ENCSR141NSQ [3, 7.74e+03]
n
29,112,594
mean
92.3
sd
132

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 291125940.90% 193697
chr1 2568208 1.03% 17092
chr2 2487544 1.03% 16553
chr3 2000196 1.01% 13316
chr4 1662851 0.87% 11053
chr5 1750600 0.96% 11645
chr6 1818959 1.06% 12103
chr7 1504196 0.94% 10008
chr8 1428513 0.98% 9508
chr9 1238130 0.89% 8239
chr10 1414759 1.06% 9413
chr11 1434291 1.06% 9546
chr12 1414980 1.06% 9412
chr13 885270 0.77% 5887
chr14 918103 0.86% 6109
chr15 938257 0.92% 6247
chr16 811512 0.90% 5401
chr17 1031267 1.24% 6862
chr18 722583 0.90% 4796
chr19 708281 1.21% 4717
chr20 694805 1.08% 4624
chr21 363300 0.78% 2416
chr22 431550 0.85% 2872
chrX 843339 0.54% 5604
chrY 41100 0.07% 274
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 193697 6 515 150.3 150
global segment-length histogram

Files

Filename Size md5
ENCFF397QTB.bed.gz 1.83 MB 1e7da4c53a3e5f00261af292e2d90001
ENCFF397QTB.tabix.bed.gz 1.58 MB 7542e0de9264e67eb6de354a4222e4b6
ENCFF397QTB.tabix.bed.gz.tbi 688.72 KB f1b472f4606d1ea00d3622b5b51eeab8
genomic_resource.yaml 1.4 KB 76338300edaa776681e12d2706940074
statistics/