Resource

Id DNase-seq/ENCSR140KPOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR140KPO [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR140KPO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (33 years)
  • date_created: 2020-04-17T19:27:28.127492+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR140KPO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR140KPO float

DNase-seq_ENCSR140KPO

DNase-seq ENCSR140KPO [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
HISTOGRAM FOR DNase-seq_ENCSR140KPO [0.132, 94.5]
n
10,238,672
mean
8.39
sd
11.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 102386720.32% 55357
chr1 1027497 0.41% 5506
chr2 703546 0.29% 3813
chr3 544607 0.27% 2948
chr4 343602 0.18% 1846
chr5 449107 0.25% 2447
chr6 589038 0.34% 3164
chr7 470329 0.30% 2566
chr8 371546 0.26% 2041
chr9 407042 0.29% 2215
chr10 447542 0.33% 2422
chr11 532055 0.39% 2881
chr12 521348 0.39% 2803
chr13 204839 0.18% 1099
chr14 366888 0.34% 1964
chr15 326837 0.32% 1800
chr16 429490 0.48% 2347
chr17 639045 0.77% 3442
chr18 162967 0.20% 889
chr19 705626 1.20% 3724
chr20 296872 0.46% 1621
chr21 126130 0.27% 690
chr22 254620 0.50% 1404
chrX 318019 0.20% 1724
chrY 80 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55357 1 780 184.96 180
global segment-length histogram

Files

Filename Size md5
ENCFF594KUR.bed.gz 618.01 KB bd484d68f43c100a15c54dcbfd7a8169
ENCFF594KUR.tabix.bed.gz 567.83 KB f06f4643d81381ede1812eaae643854f
ENCFF594KUR.tabix.bed.gz.tbi 240.9 KB 0dc3708a1b7f00aba077f729883844e3
genomic_resource.yaml 1.19 KB 2310bbd130c66f92d26053a4be4e2714
statistics/