| Id: | DNase-seq/ENCSR139KYP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR139KYP [biosample_summary="Homo sapiens T-helper 17 cell female adult (25 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female adult (25 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF301RBU|/files/ENCFF301RBU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR139KYP | float |
DNase-seq_ENCSR139KYP |
DNase-seq ENCSR139KYP [biosample_summary="Homo sapiens T-helper 17 cell female adult (25 years)"]
|
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[0.213, 21.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF815HBL.bed.gz | 255.35 KB | 76643542281a9dc962e89ec9b5e35d1f |
| ENCFF815HBL.bed.gz.dvc | 100.0 B | 47e5469392542f825afe1c7e419a09f6 |
| ENCFF815HBL.tabix.bed.gz | 233.81 KB | baee40927e787b23bde3ed0ab8b36ec7 |
| ENCFF815HBL.tabix.bed.gz.dvc | 106.0 B | 256e1c999a7f912cfa69eceaecb6f710 |
| ENCFF815HBL.tabix.bed.gz.tbi | 128.97 KB | 76d474f79a7a242c075116c98c44d7cd |
| ENCFF815HBL.tabix.bed.gz.tbi.dvc | 110.0 B | 00046f014350ea02a715011e46b844e6 |
| genomic_resource.yaml | 2.14 KB | f13b2c9425c5cc47a8b15f2f40bd2144 |
| genomic_resource_original.yaml | 2.04 KB | 6fc71d171b770416dbe27347211ece21 |
| statistics/ |