Resource

Id DNase-seq/ENCSR138UGHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR138UGH [biosample_summary="Homo sapiens ovary tissue female adult (61 years)"]
Description
Labels
  • accession: ENCSR138UGH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (61 years)
  • date_created: 2019-02-01T20:20:58.311643+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR138UGH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR138UGH float

DNase-seq_ENCSR138UGH

DNase-seq ENCSR138UGH [biosample_summary="Homo sapiens ovary tissue female adult (61 years)"]
HISTOGRAM FOR DNase-seq_ENCSR138UGH [0.0413, 50.2]
n
27,695,977
mean
2.22
sd
3.97

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 276959770.86% 129553
chr1 2503393 1.01% 11618
chr2 2159645 0.89% 10132
chr3 1371944 0.69% 6535
chr4 944549 0.50% 4372
chr5 1077559 0.59% 5169
chr6 1060648 0.62% 5147
chr7 1376257 0.86% 6457
chr8 1115771 0.77% 5234
chr9 1411882 1.02% 6464
chr10 1514222 1.13% 7079
chr11 1699557 1.26% 7891
chr12 1149473 0.86% 5456
chr13 432257 0.38% 2030
chr14 995066 0.93% 4592
chr15 901223 0.88% 4271
chr16 1247930 1.38% 5908
chr17 1783646 2.14% 8305
chr18 448547 0.56% 2125
chr19 1386665 2.37% 6342
chr20 847777 1.32% 4069
chr21 557367 1.19% 2384
chr22 1104965 2.17% 5114
chrX 605223 0.39% 2855
chrY 411 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129553 1 1140 213.78 200
global segment-length histogram

Files

Filename Size md5
ENCFF172OPL.bed.gz 1.34 MB 7869295d054826c4178588785f814034
ENCFF172OPL.tabix.bed.gz 1.25 MB ce8466f8fffbf5692c5953e40e450f67
ENCFF172OPL.tabix.bed.gz.tbi 305.55 KB a94d731dd15152122bfd157559a6cc5c
genomic_resource.yaml 1.21 KB cca5b65c9be53e3fcd812757ceb031bc
statistics/