DNase-seq_ENCSR136KEL
DNase-seq ENCSR136KEL [biosample_summary="Homo sapiens kidney glomerular epithelial cell male adult (43 years) and male adult (62 years)"]
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| Id: | DNase-seq/ENCSR136KEL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR136KEL [biosample_summary="Homo sapiens kidney glomerular epithelial cell male adult (43 years) and male adult (62 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: male adult (43 years) male adult (62 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF789WYX|/files/ENCFF789WYX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.17. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF925RDJ|/files/ENCFF925RDJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR136KEL | float |
DNase-seq_ENCSR136KEL |
DNase-seq ENCSR136KEL [biosample_summary="Homo sapiens kidney glomerular epithelial cell male adult (43 years) and male adult (62 years)"]
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[0.0338, 17.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF718KQK.bed.gz | 2.1 MB | 2f57fc7f2348a89906fcce6f0cc5a475 |
| ENCFF718KQK.bed.gz.dvc | 101.0 B | 62c5523e4aa4ee41c6f4e8e1d196dd0b |
| ENCFF718KQK.tabix.bed.gz | 1.92 MB | f8e1e279ae25aa4583fcb6dbc4a99638 |
| ENCFF718KQK.tabix.bed.gz.dvc | 107.0 B | b81c68f9a8146fd0bb2727071ac0391a |
| ENCFF718KQK.tabix.bed.gz.tbi | 639.62 KB | 0cc41b4e1f0affb88b10882fdc7e4c40 |
| ENCFF718KQK.tabix.bed.gz.tbi.dvc | 110.0 B | 5aff6d210a209a1503e311afd8ec4183 |
| genomic_resource.yaml | 3.02 KB | e09cd87c4e2a003bc1ed082203e96c2c |
| genomic_resource_original.yaml | 2.88 KB | 115186bf49e62d2cdc4105c3e24fc105 |
| statistics/ |