| Id: | DNase-seq/ENCSR135XMY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR135XMY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF604QXW|/files/ENCFF604QXW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 44108228 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR135XMY | float |
DNase-seq_ENCSR135XMY |
DNase-seq ENCSR135XMY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"]
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[0.227, 38.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF550LNR.bed.gz | 406.08 KB | 71bbf6e7f68288e74fb329f81410d0e8 |
| ENCFF550LNR.bed.gz.dvc | 100.0 B | fa50a8a3110897f59c753f19e98aa868 |
| ENCFF550LNR.tabix.bed.gz | 369.96 KB | 6d39ee7ae1b5c32b57acd577ff6a4af2 |
| ENCFF550LNR.tabix.bed.gz.dvc | 106.0 B | 26201947a0a6b874e2d2a297630fcffb |
| ENCFF550LNR.tabix.bed.gz.tbi | 188.61 KB | 4c2bcbed853343ee83814b4a01c88870 |
| ENCFF550LNR.tabix.bed.gz.tbi.dvc | 110.0 B | f920de9be1953fb9a3ebb846dda1d05e |
| genomic_resource.yaml | 2.8 KB | 59c93afc31ff6a868ea5d8a049def29a |
| genomic_resource_original.yaml | 2.5 KB | 35711d090d7b22054fd3185df0c1e9b4 |
| statistics/ |