Resource

Id DNase-seq/ENCSR135XMYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR135XMY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"]
Description
Labels
  • accession: ENCSR135XMY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours
  • date_created: 2020-04-19T18:36:47.410361+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR135XMY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR135XMY float

DNase-seq_ENCSR135XMY
DNase-seq ENCSR135XMY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR135XMY [0.227, 38.8]
n
7,532,248
mean
5.83
sd
5.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75322480.23% 36805
chr1 771399 0.31% 3777
chr2 514813 0.21% 2505
chr3 399206 0.20% 1914
chr4 258452 0.14% 1243
chr5 324885 0.18% 1594
chr6 440694 0.26% 2113
chr7 336145 0.21% 1676
chr8 267949 0.18% 1316
chr9 301223 0.22% 1490
chr10 326421 0.24% 1590
chr11 380238 0.28% 1871
chr12 395805 0.30% 1935
chr13 149015 0.13% 705
chr14 254674 0.24% 1230
chr15 244669 0.24% 1243
chr16 324016 0.36% 1588
chr17 487491 0.59% 2377
chr18 106822 0.13% 525
chr19 537853 0.92% 2588
chr20 212678 0.33% 1068
chr21 87304 0.19% 435
chr22 194829 0.38% 969
chrX 215667 0.14% 1053
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36805 1 840 204.65 200
global segment-length histogram

Files

Filename Size md5
ENCFF550LNR.bed.gz 406.08 KB 71bbf6e7f68288e74fb329f81410d0e8
ENCFF550LNR.tabix.bed.gz 369.96 KB 6d39ee7ae1b5c32b57acd577ff6a4af2
ENCFF550LNR.tabix.bed.gz.tbi 188.61 KB 4c2bcbed853343ee83814b4a01c88870
genomic_resource.yaml 2.8 KB 59c93afc31ff6a868ea5d8a049def29a
statistics/