| Id: | DNase-seq/ENCSR134CIY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR134CIY [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF817SMO|/files/ENCFF817SMO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40229274 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR134CIY | float |
DNase-seq_ENCSR134CIY |
DNase-seq ENCSR134CIY [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
|
 |
[0.199, 48.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF314PFZ.bed.gz | 552.34 KB | 027ad0e848d07e7ca3b8eced782225e9 |
| ENCFF314PFZ.bed.gz.dvc | 100.0 B | daa0cc01be062f67ca36403df5216c45 |
| ENCFF314PFZ.tabix.bed.gz | 502.34 KB | 4c69cee68b00113fa89dfd0925510986 |
| ENCFF314PFZ.tabix.bed.gz.dvc | 106.0 B | e31531d423eb8dec2e099946dedc8427 |
| ENCFF314PFZ.tabix.bed.gz.tbi | 245.3 KB | e3d7aa9a5073c186a76c467698fe46ad |
| ENCFF314PFZ.tabix.bed.gz.tbi.dvc | 110.0 B | 567fc38f55c7f9515dd25753cf92d99b |
| genomic_resource.yaml | 2.43 KB | 82a90caa870d5c4274fe64e941b5e26b |
| genomic_resource_original.yaml | 2.21 KB | a24ff9bf5bf43b07d3742a0a6a2beb78 |
| statistics/ |